RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 EFHD2Q96C19 240 aaPredicted RBP9.7□□□□□ -0.86
LIG1-210ENST00000596332 SGCZQ96LD1 299 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 ADOQ96SZ5 270 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 CGREF1Q99674 301 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 KLHDC3Q9BQ90 382 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 CPPED1Q9BRF8 314 aaPredicted RBP9.7□□□□□ -0.86
LIG1-210ENST00000596332 GPATCH1Q9BRR8 931 aaKnown RBP9.7□□□□□ -0.86
LIG1-210ENST00000596332 SLC39A3Q9BRY0 314 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 ANGPTL4Q9BY76 406 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 SAP130Q9H0E3 1048 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 NSRP1Q9H0G5 558 aaKnown RBP9.7□□□□□ -0.86
LIG1-210ENST00000596332 RMND5AQ9H871 391 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 ARL8BQ9NVJ2 186 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 LUZP4Q9P127 313 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 LEF1Q9UJU2 399 aaPredicted RBP9.7□□□□□ -0.86
LIG1-210ENST00000596332 VPS4AQ9UN37 437 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 PCDHGB4Q9UN71 923 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 CAPN7Q9Y6W3 813 aa9.7□□□□□ -0.86
LIG1-210ENST00000596332 CLIC1O00299 241 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 SUV39H1O43463 412 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 ASNA1O43681 348 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 TRIM3O75382 744 aaPredicted RBP9.69□□□□□ -0.86
LIG1-210ENST00000596332 GCM2O75603 506 aaPredicted RBP9.69□□□□□ -0.86
LIG1-210ENST00000596332 SLC25A12O75746 678 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 ALOX5P09917 674 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 ETFAP13804 333 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 CNR1P21554 472 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 SOAT1P35610 550 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 PRIM2P49643 509 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 KLRB1Q12918 225 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 CYLC2Q14093 348 aaPredicted RBP9.69□□□□□ -0.86
LIG1-210ENST00000596332 CAPRIN1Q14444 709 aaKnown RBP9.69□□□□□ -0.86
LIG1-210ENST00000596332 MAPK14Q16539 360 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 SYPL1Q16563 259 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.69□□□□□ -0.86
LIG1-210ENST00000596332 ARHGAP11BQ3KRB8 267 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 SPDYE7PQ495Y7 208 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 HLA-DQA1Q5Y7H0 255 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 REP15Q6BDI9 236 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 NANOGP8Q6NSW7 305 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 TNFAIP8L2Q6P589 184 aaPredicted RBP9.69□□□□□ -0.86
LIG1-210ENST00000596332 FIGNL1Q6PIW4 674 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 RTL4Q6ZR62 310 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 GALNTL5Q7Z4T8 443 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 TAGAPQ8N103 731 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 WDSUB1Q8N9V3 476 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 EXPH5Q8NEV8 1989 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 OR5M3Q8NGP4 307 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 ZNF524Q96C55 264 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 RMND5BQ96G75 393 aaPredicted RBP9.69□□□□□ -0.86
LIG1-210ENST00000596332 SLC35G5Q96KT7 338 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 ANKRD27Q96NW4 1050 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 COL21A1Q96P44 957 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 SECISBP2Q96T21 854 aaKnown RBP9.69□□□□□ -0.86
LIG1-210ENST00000596332 BTBD2Q9BX70 525 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 RUBCNLQ9H714 662 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 NANOGQ9H9S0 305 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 IL1RL2Q9HB29 575 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 KLHL1Q9NR64 748 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 HPF1Q9NWY4 346 aa9.69□□□□□ -0.86
LIG1-210ENST00000596332 GMPR2Q9P2T1 348 aaKnown RBP9.69□□□□□ -0.86
LIG1-210ENST00000596332 PRRC2CQ9Y520 2896 aaKnown RBP9.68□□□□□ -0.86
LIG1-210ENST00000596332 TRAV17A0A0B4J275 112 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 C2orf72A6NCS6 295 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 LRRC3CA6NJW4 275 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 G3V3Y1 287 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 PEX1O43933 1283 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 ICOSLGO75144 302 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 REM1O75628 298 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 GLSO94925 669 aaPredicted RBP9.68□□□□□ -0.86
LIG1-210ENST00000596332 KCNH1O95259 989 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 CHRM4P08173 479 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 GUSBP08236 651 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 RFPL3SP0C7P2 107 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 SLC6A2P23975 617 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 PRDX6P30041 224 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 DNASE1L1P49184 302 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 GPR85P60893 370 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 POU6F2P78424 691 aaPredicted RBP9.68□□□□□ -0.86
LIG1-210ENST00000596332 PMP22Q01453 160 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 OC90Q02509 493 aaPredicted RBP9.68□□□□□ -0.86
LIG1-210ENST00000596332 PLCXD2Q0VAA5 305 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 NFATC3Q12968 1075 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 GRAMD1BQ3KR37 738 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 RABL3Q5HYI8 236 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 C6orf10Q5SRN2 563 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 DCST2Q5T1A1 773 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 SLC22A10Q63ZE4 541 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 TYW3Q6IPR3 259 aaKnown RBP9.68□□□□□ -0.86
LIG1-210ENST00000596332 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.68□□□□□ -0.86
LIG1-210ENST00000596332 DHDDSQ86SQ9 333 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 CALHM3Q86XJ0 350 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 PTOV1Q86YD1 416 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 SIAH3Q8IW03 269 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 CHERPQ8IWX8 916 aaKnown RBP9.68□□□□□ -0.86
LIG1-210ENST00000596332 DND1Q8IYX4 353 aaKnown RBP9.68□□□□□ -0.86
LIG1-210ENST00000596332 FBXW8Q8N3Y1 598 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 ANKFN1Q8N957 763 aa9.68□□□□□ -0.86
LIG1-210ENST00000596332 ZFP62Q8NB50 900 aaPredicted RBP9.68□□□□□ -0.86
LIG1-210ENST00000596332 POGLUT1Q8NBL1 392 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms