RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 REEP1Q9H902 201 aa14.08□□□□□ -0.15
VRK3-207ENST00000594092 THSD1Q9NS62 852 aa14.08□□□□□ -0.15
VRK3-207ENST00000594092 FBXO34Q9NWN3 711 aa14.08□□□□□ -0.15
VRK3-207ENST00000594092 SMPD3Q9NY59 655 aaPredicted RBP14.08□□□□□ -0.15
VRK3-207ENST00000594092 NXT1Q9UKK6 140 aaKnown RBP14.08□□□□□ -0.15
VRK3-207ENST00000594092 MKLN1Q9UL63 735 aa14.08□□□□□ -0.15
VRK3-207ENST00000594092 WDR45Q9Y484 360 aa14.08□□□□□ -0.15
VRK3-207ENST00000594092 IGHV3-20A0A0C4DH32 117 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 TTC36A6NLP5 189 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 C9orf172C9J069 976 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 C9J4A7 227 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 DPM1O60762 260 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 CYC1P08574 325 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 NHSL2Q5HYW2 709 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 FIGNL1Q6PIW4 674 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 MARVELD2Q8N4S9 558 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 OR4N2Q8NGD1 307 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 WDR36Q8NI36 951 aaKnown RBP14.08□□□□□ -0.16
VRK3-207ENST00000594092 APOBEC4Q8WW27 367 aaKnown RBP14.08□□□□□ -0.16
VRK3-207ENST00000594092 RMND5BQ96G75 393 aaPredicted RBP14.08□□□□□ -0.16
VRK3-207ENST00000594092 SLC46A1Q96NT5 459 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 SAP130Q9H0E3 1048 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 MTHFD2LQ9H903 347 aaPredicted RBP14.08□□□□□ -0.16
VRK3-207ENST00000594092 PCDHGA3Q9Y5H0 932 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 U3KQV3 271 aa14.08□□□□□ -0.16
VRK3-207ENST00000594092 STX11O75558 287 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 DIRAS1O95057 198 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 KCNK2O95069 426 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 DLGAP3O95886 979 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 ALPPP05187 535 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 CSRP1P21291 193 aaKnown RBP14.07□□□□□ -0.16
VRK3-207ENST00000594092 DNAJA1P31689 397 aaKnown RBP14.07□□□□□ -0.16
VRK3-207ENST00000594092 TRHRP34981 398 aaPredicted RBP14.07□□□□□ -0.16
VRK3-207ENST00000594092 PUM1Q14671 1186 aaKnown RBP eCLIP14.07□□□□□ -0.16
VRK3-207ENST00000594092 NCF4Q15080 339 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 PDK3Q15120 406 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 C3orf38Q5JPI3 329 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 FAM69BQ5VUD6 431 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 SHQ1Q6PI26 577 aaKnown RBP14.07□□□□□ -0.16
VRK3-207ENST00000594092 TMEM205Q6UW68 189 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 COMTD1Q86VU5 262 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 ZSCAN1Q8NBB4 408 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 MORN4Q8NDC4 146 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 OR1N1Q8NGS0 311 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 PROX1Q92786 737 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 ZNF354BQ96LW1 612 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 CNBD2Q96M20 576 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 RBM4BQ9BQ04 359 aaKnown RBP14.07□□□□□ -0.16
VRK3-207ENST00000594092 RBM4Q9BWF3 364 aaKnown RBP14.07□□□□□ -0.16
VRK3-207ENST00000594092 SPRY4Q9C004 299 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 NDUFAF4Q9P032 175 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 CFL2Q9Y281 166 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 GPR55Q9Y2T6 319 aaPredicted RBP14.07□□□□□ -0.16
VRK3-207ENST00000594092 SH3GLB1Q9Y371 365 aa14.07□□□□□ -0.16
VRK3-207ENST00000594092 SAMHD1Q9Y3Z3 626 aaKnown RBP14.07□□□□□ -0.16
VRK3-207ENST00000594092 MAGED1Q9Y5V3 778 aaPredicted RBP14.07□□□□□ -0.16
VRK3-207ENST00000594092 DLGAP1O14490 977 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 ADAMDEC1O15204 470 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 KLF7O75840 302 aaPredicted RBP14.06□□□□□ -0.16
VRK3-207ENST00000594092 ALPLP05186 524 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 PABPC4LP0CB38 370 aaKnown RBP14.06□□□□□ -0.16
VRK3-207ENST00000594092 FPR1P21462 350 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 GPR143P51810 404 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 KCNC4Q03721 635 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 MERTKQ12866 999 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 NNATQ16517 81 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 AP1ARQ63HQ0 302 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 C6orf15Q6UXA7 325 aaPredicted RBP14.06□□□□□ -0.16
VRK3-207ENST00000594092 TIPARPQ7Z3E1 657 aaKnown RBP14.06□□□□□ -0.16
VRK3-207ENST00000594092 TMEM179BQ7Z7N9 219 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 ZNF300Q96RE9 604 aaPredicted RBP14.06□□□□□ -0.16
VRK3-207ENST00000594092 ADI1Q9BV57 179 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 PINK1Q9BXM7 581 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 AMBRA1Q9C0C7 1298 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 Q9N2J8 555 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 VNN3Q9NY84 501 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 USE1Q9NZ43 259 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 COPS7AQ9UBW8 275 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 PADI1Q9ULC6 663 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 GVINP1Q7Z2Y8 2422 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 DMXL1Q9Y485 3027 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 SAGE2PA6NJ88 616 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 TM4SF5O14894 197 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 KIAA0513O60268 411 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 BRINP1O60477 761 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 EPPINO95925 133 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 IGKV1D-16P01601 117 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 IFNW1P05000 195 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 PPICP45877 212 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 PPP1R8Q12972 351 aaKnown RBP14.06□□□□□ -0.16
VRK3-207ENST00000594092 TARDBPQ13148 414 aaKnown RBP eCLIP14.06□□□□□ -0.162e-6■■■■□ 23
VRK3-207ENST00000594092 GPR68Q15743 365 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 ZNF311Q5JNZ3 666 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 CPEB2Q7Z5Q1 589 aaKnown RBP14.06□□□□□ -0.16
VRK3-207ENST00000594092 ZAR1Q86SH2 424 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 VRK2Q86Y07 508 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 C9orf40Q8IXQ3 194 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 ZNF619Q8N2I2 560 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 AMER2Q8N7J2 671 aa14.06□□□□□ -0.16
VRK3-207ENST00000594092 NFAM1Q8NET5 270 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms