RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 MRPL19P49406 292 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 NUDT2P50583 147 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 BMXP51813 675 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 CAPZA1P52907 286 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PNLIPRP2P54317 469 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 NME5P56597 212 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PSME3P61289 254 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ESRRGP62508 458 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 MRPS22P82650 360 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 CXCL9Q07325 125 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PSMD5Q16401 504 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 MOGQ16653 247 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 CDO1Q16878 200 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PNLIPRP3Q17RR3 467 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SLC25A52Q3SY17 297 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SLC36A3Q495N2 470 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 GTDC1Q4AE62 458 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 TCTE1Q5JU00 501 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 CELF3Q5SZQ8 465 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 MPP7Q5T2T1 576 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 C6orf52Q5T4I8 152 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 IL23RQ5VWK5 629 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ACSM2BQ68CK6 577 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 FAM45BPQ6NSW5 357 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 FAAP20Q6NZ36 180 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SCARA5Q6ZMJ2 495 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ERN2Q76MJ5 926 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PID1Q7Z2X4 250 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ADCK2Q7Z695 626 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 GLRX5Q86SX6 157 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 CNTN4Q8IWV2 1026 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 TUSC5Q8IXB3 177 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 AQP12AQ8IXF9 295 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ZNF567Q8N184 647 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SIX6OS1Q8N1H7 587 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 LRRC52Q8N7C0 313 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SMYD1Q8NB12 490 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PAPD5Q8NDF8 572 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 FGFBP3Q8TAT2 258 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 FAM45AQ8TCE6 357 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PNPT1Q8TCS8 783 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SPPL2BQ8TCT7 592 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 KCNE4Q8WWG9 221 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SGCDQ92629 289 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SLCO4A1Q96BD0 722 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 MOAP1Q96BY2 351 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ROPN1LQ96C74 230 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 RCN3Q96D15 328 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 HDAC11Q96DB2 347 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 CCDC126Q96EE4 140 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PIWIL1Q96J94 861 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SLC45A3Q96JT2 553 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PRAC1Q96KF2 57 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 CNBD2Q96M20 576 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 TMEM68Q96MH6 324 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 TSGA13Q96PP4 275 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 NPY6RQ99463 290 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SLC29A1Q99808 456 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 CCT7Q99832 543 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SEMA3CQ99985 751 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 HOPXQ9BPY8 73 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 RBM4BQ9BQ04 359 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 RHNO1Q9BSD3 238 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 RHOJQ9H4E5 214 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 DHX35Q9H5Z1 703 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 WDR55Q9H6Y2 383 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 RANGRFQ9HD47 186 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PALMDQ9NP74 551 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ZNF71Q9NQZ8 489 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SLC7A10Q9NS82 523 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SETD4Q9NVD3 440 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ATAD3AQ9NVI7 634 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 DDX18Q9NVP1 670 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 GPATCH2LQ9NWQ4 482 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 GIN1Q9NXP7 522 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 DPP3Q9NY33 737 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.56□□□□□ -1.847e-6■■■■□ 21.6
SMCHD1-208ENST00000583344 AKAP7Q9P0M2 348 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 TMEM9Q9P0T7 183 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 TXNDC16Q9P2K2 825 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 CACNG4Q9UBN1 327 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 UBA2Q9UBT2 640 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 HMGXB4Q9UGU5 601 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 OSGIN1Q9UJX0 560 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 BLOC1S6Q9UL45 172 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 EXOGQ9Y2C4 368 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 WDR37Q9Y2I8 494 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ACOT9Q9Y305 439 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 SH3GLB1Q9Y371 365 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 MAU2Q9Y6X3 613 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 PTPRFP10586 1907 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 KIAA1217Q5T5P2 1943 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 ANK1P16157 1881 aa3.56□□□□□ -1.84
SMCHD1-208ENST00000583344 TCRBV21S2A2A0A5A6 115 aa3.55□□□□□ -1.84
SMCHD1-208ENST00000583344 HEATR9A2RTY3 570 aa3.55□□□□□ -1.84
SMCHD1-208ENST00000583344 A4D1N5 150 aa3.55□□□□□ -1.84
SMCHD1-208ENST00000583344 CCDC160A6NGH7 325 aa3.55□□□□□ -1.84
SMCHD1-208ENST00000583344 PSMD12O00232 456 aaPredicted RBP3.55□□□□□ -1.84
SMCHD1-208ENST00000583344 RNF103O00237 685 aa3.55□□□□□ -1.84
SMCHD1-208ENST00000583344 FBP2O00757 339 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms