RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TLX1P31314 330 aaPredicted RBP14.18□□□□□ -0.14
VPS53-218ENST00000575207 STIP1P31948 543 aaKnown RBP14.18□□□□□ -0.14
VPS53-218ENST00000575207 SNRPD2P62316 118 aaKnown RBP14.18□□□□□ -0.14
VPS53-218ENST00000575207 TNFRSF17Q02223 184 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 ZNHIT3Q15649 155 aaPredicted RBP14.18□□□□□ -0.14
VPS53-218ENST00000575207 AP5B1Q2VPB7 878 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 TMEM201Q5SNT2 666 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 C11orf63Q6NUN7 778 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 PAQR3Q6TCH7 311 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 KLHL17Q6TDP4 642 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 OR2M3Q8NG83 312 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 COL21A1Q96P44 957 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 DSN1Q9H410 356 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 SMYD2Q9NRG4 433 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 SOX13Q9UN79 622 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 ATP23Q9Y6H3 246 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 PCLOQ9Y6V0 5065 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 DNAH1Q9P2D7 4330 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 OR5H1A6NKK0 313 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 C17orf51A8MQB3 221 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 AP3B1O00203 1094 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 SYNGR4O95473 234 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 IFNB1P01574 187 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 PRB2P02812 416 aaPredicted RBP14.17□□□□□ -0.14
VPS53-218ENST00000575207 ENO2P09104 434 aaPredicted RBP14.17□□□□□ -0.14
VPS53-218ENST00000575207 DAOP14920 347 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 S1PR1P21453 382 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 BUD31P41223 144 aaPredicted RBP14.17□□□□□ -0.14
VPS53-218ENST00000575207 SSR2P43308 183 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 TIAL1Q01085 375 aaKnown RBP eCLIP14.17□□□□□ -0.14
VPS53-218ENST00000575207 SLAMF1Q13291 335 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 ACAP2Q15057 778 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 TSNAXIP1Q2TAA8 658 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 GLYR1Q49A26 553 aaPredicted RBP14.17□□□□□ -0.14
VPS53-218ENST00000575207 GPR180Q86V85 440 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 ZNF786Q8N393 782 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 RNF10Q8N5U6 811 aaKnown RBP14.17□□□□□ -0.14
VPS53-218ENST00000575207 SLC35A4Q96G79 324 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 ITPAQ9BY32 194 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 RASSF4Q9H2L5 321 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 LPAR2Q9HBW0 351 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 ZNF490Q9ULM2 529 aaPredicted RBP14.17□□□□□ -0.14
VPS53-218ENST00000575207 MOKQ9UQ07 419 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 WNK2Q9Y3S1 2297 aa14.17□□□□□ -0.14
VPS53-218ENST00000575207 TENM2Q9NT68 2774 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 PCNX3Q9H6A9 2034 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 TRAV20A0A0B4J274 112 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 TO15178 435 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 ADAMDEC1O15204 470 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 SLU7O95391 586 aaKnown RBP14.16□□□□□ -0.14
VPS53-218ENST00000575207 RNASE1P07998 156 aaKnown RBP14.16□□□□□ -0.14
VPS53-218ENST00000575207 GGT1P19440 569 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 FPR2P25090 351 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 ZNF83P51522 516 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 RWDD2BP57060 319 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 LOXL3P58215 753 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 COL10A1Q03692 680 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 THOC5Q13769 683 aaKnown RBP14.16□□□□□ -0.14
VPS53-218ENST00000575207 PPP1R3AQ16821 1122 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 LEG1Q6P5S2 330 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 SLC46A3Q7Z3Q1 461 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 OR51F2Q8NH61 342 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 MRAPQ8TCY5 172 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 C1orf147Q96MC9 270 aaPredicted RBP14.16□□□□□ -0.14
VPS53-218ENST00000575207 FKRPQ9H9S5 495 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 G6PC2Q9NQR9 355 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 STOML1Q9UBI4 398 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 PHF11Q9UIL8 331 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 CFL2Q9Y281 166 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 RYR1P21817 5038 aa14.16□□□□□ -0.14
VPS53-218ENST00000575207 DNAJC9-AS1A6NH13 148 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 CXCL13O43927 109 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 ZNF17P17021 662 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 DDX5P17844 614 aaKnown RBP14.15□□□□□ -0.14
VPS53-218ENST00000575207 COX5AP20674 150 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 SLC1A2P43004 574 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 SLMAPQ14BN4 828 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 TMEM44Q2T9K0 475 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 TMEM35AQ53FP2 167 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 ASPHD2Q6ICH7 369 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 RBMS3Q6XE24 437 aaKnown RBP14.15□□□□□ -0.14
VPS53-218ENST00000575207 C17orf107Q6ZR85 190 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 DOK3Q7L591 496 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 TUSC5Q8IXB3 177 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 NANPQ8TBE9 248 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 FAM110BQ8TC76 370 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 TAF15Q92804 592 aaKnown RBP eCLIP14.15□□□□□ -0.14
VPS53-218ENST00000575207 WWC2-AS2Q96NR7 200 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 DUX5Q96PT3 197 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 MS4A8Q9BY19 250 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 GP6Q9HCN6 339 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 TAS2R13Q9NYV9 303 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 KLHL13Q9P2N7 655 aa14.15□□□□□ -0.14
VPS53-218ENST00000575207 A0A1B0GUS0 222 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 A0A1W2PS29 197 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 GLOD5A6NK44 160 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 HAUS5O94927 633 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 PABPC4LP0CB38 370 aaKnown RBP14.14□□□□□ -0.15
VPS53-218ENST00000575207 IFNGR1P15260 489 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 CD22P20273 847 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms