RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 IKZF2Q9UKS7 526 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 VDAC3Q9Y277 283 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 WASHC1A8K0Z3 465 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 K7ESF4 209 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 P2RX6O15547 441 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 IGLV3-19P01714 112 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 ZGLP1P0C6A0 271 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 PCDH1Q08174 1060 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 SELPLGQ14242 412 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 ALG10BQ5I7T1 473 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 THAP5Q7Z6K1 395 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 OR6K6Q8NGW6 343 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 PIP5K1AQ99755 562 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 TREX2Q9BQ50 279 aaPredicted RBP9.45□□□□□ -0.9
SMG6-213ENST00000573166 UCK2Q9BZX2 261 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 CCM2LQ9NUG4 571 aaPredicted RBP9.45□□□□□ -0.9
SMG6-213ENST00000573166 TMEM5Q9Y2B1 443 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 HEMK1Q9Y5R4 338 aaPredicted RBP9.45□□□□□ -0.9
SMG6-213ENST00000573166 SMIM31A0A1B0GVY4 71 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 DLL1O00548 723 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 HCN1O60741 890 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 CH25HO95992 272 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 F10P00742 488 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 PERM1Q5SV97 790 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 LCN8Q6JVE9 175 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 FAM199XQ6PEV8 388 aaPredicted RBP9.45□□□□□ -0.9
SMG6-213ENST00000573166 UTS2BQ765I0 119 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 CARFQ8N187 725 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 SLC16A11Q8NCK7 471 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 OR51A7Q8NH64 312 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 GATA6Q92908 595 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 ZNF578Q96N58 590 aaPredicted RBP9.45□□□□□ -0.9
SMG6-213ENST00000573166 TMEM121BQ9BXQ6 578 aaPredicted RBP9.45□□□□□ -0.9
SMG6-213ENST00000573166 KCNN2Q9H2S1 579 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 PNPLA3Q9NST1 481 aa9.45□□□□□ -0.9
SMG6-213ENST00000573166 RPH3AQ9Y2J0 694 aaPredicted RBP9.45□□□□□ -0.9
SMG6-213ENST00000573166 EFCAB9A8MZ26 197 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 H3BSA7 217 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 TMCC2O75069 709 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 HMGN1P05114 100 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 RHCEP18577 417 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 SDHBP21912 280 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 CCL11P51671 97 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 CHRNEQ04844 493 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 TLR1Q15399 786 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 ZNF425Q6IV72 752 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 VN1R4Q7Z5H5 301 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 OAFQ86UD1 273 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 PDSS2Q86YH6 399 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 NT5CQ8TCD5 201 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 ZFP90Q8TF47 636 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 LCORQ96JN0 433 aaPredicted RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 IL4I1Q96RQ9 567 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 KAT8Q9H7Z6 458 aaKnown RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 CD320Q9NPF0 282 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 POFUT2Q9Y2G5 429 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 MFN2O95140 757 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 CLIC3O95833 236 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 ANGPTL1O95841 491 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 HOXC12P31275 282 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 RPL5P46777 297 aaKnown RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 SELENOWP63302 87 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 PDZK1Q5T2W1 519 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 RPS19BP1Q86WX3 136 aaKnown RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 PARP8Q8N3A8 854 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 OR6N1Q8NGY5 312 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 CPPED1Q9BRF8 314 aaPredicted RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 TSSK6Q9BXA6 273 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 PAIP1Q9H074 479 aaKnown RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 FOLH1BQ9HBA9 442 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 MCCC2Q9HCC0 563 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 TIMMDC1Q9NPL8 285 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 CTSFQ9UBX1 484 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 MAN2B2Q9Y2E5 1009 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 ENPP4Q9Y6X5 453 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 STMND1H3BQB6 276 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 ZNF195O14628 629 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 RENP00797 406 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 GKN3PP0CG01 181 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 ARAFP10398 606 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 UBL4AP11441 157 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 CCL4P13236 92 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 GPR143P51810 404 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 CRYZQ08257 329 aaKnown RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 DCTN2Q13561 401 aaKnown RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 NPTX1Q15818 432 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 ZSWIM7Q19AV6 140 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 PRAMEF20Q5VT98 475 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 FCRL6Q6DN72 434 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 WDR74Q6RFH5 385 aaPredicted RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 PRSS41Q7RTY9 318 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 SLC34A3Q8N130 599 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 SAP25Q8TEE9 199 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 CSF3RQ99062 836 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 OCEL1Q9H607 264 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 PRDM7Q9NQW5 492 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 ARHGEF17Q96PE2 2063 aaPredicted RBP9.44□□□□□ -0.9
SMG6-213ENST00000573166 CEP350Q5VT06 3117 aa9.44□□□□□ -0.9
SMG6-213ENST00000573166 SCN3AQ9NY46 2000 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms