RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ZNF473Q8WTR7 871 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 IFT81Q8WYA0 676 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 NEUROG1Q92886 237 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 HGDQ93099 445 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 WDR34Q96EX3 536 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 C11orf24Q96F05 449 aaPredicted RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 LCORQ96JN0 433 aaPredicted RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 BRINP2Q9C0B6 783 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 OR10A4Q9H209 315 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 CDC42EP4Q9H3Q1 356 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 CISD1Q9NZ45 108 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 NINJ2Q9NZG7 142 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 TNPO3Q9Y5L0 923 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 WASHC1A8K0Z3 465 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 LINC01387J3KSC0 135 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 ZIC3O60481 467 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 KERAO60938 352 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 UGT2B11O75310 529 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 RBP1P09455 135 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 IGHV4-31P0DP07 118 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 CREB1P16220 341 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 HK1P19367 917 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 GPX3P22352 226 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 USF1P22415 310 aaPredicted RBP9.92□□□□□ -0.82
VPS53-207ENST00000570510 IGFBP5P24593 272 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 PTGDSP41222 190 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 MAGEA12P43365 314 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 PIK3CGP48736 1102 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 ARFIP1P53367 373 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 DSCR4P56555 118 aaPredicted RBP9.92□□□□□ -0.82
VPS53-207ENST00000570510 CLDN15P56746 228 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 PHEXP78562 749 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 LSM11P83369 360 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS53-207ENST00000570510 PGGHGQ32M88 737 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 NCMAPQ5T1S8 102 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 OR52E8Q6IFG1 317 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 TIFABQ6ZNK6 161 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 RAPH1Q70E73 1250 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 LRRC70Q7Z2Q7 622 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 ISCA2Q86U28 154 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 MYLK4Q86YV6 388 aaPredicted RBP9.92□□□□□ -0.82
VPS53-207ENST00000570510 ZCCHC7Q8N3Z6 543 aaKnown RBP9.92□□□□□ -0.82
VPS53-207ENST00000570510 ZNF615Q8N8J6 731 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 OR4K14Q8NGD5 310 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 UBTD2Q8WUN7 234 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 ANKRD49Q8WVL7 239 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 S100PBPQ96BU1 408 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 COL21A1Q96P44 957 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 TRAF4Q9BUZ4 470 aaPredicted RBP9.92□□□□□ -0.82
VPS53-207ENST00000570510 HDHD5Q9BXW7 423 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 FOLH1BQ9HBA9 442 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 NUDT4Q9NZJ9 180 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 CD274Q9NZQ7 290 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 PPP4R1LQ9P1A2 415 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 SLC17A6Q9P2U8 582 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 CLEC4AQ9UMR7 237 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 B3GALT5Q9Y2C3 310 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 TSC22D4Q9Y3Q8 395 aa9.92□□□□□ -0.82
VPS53-207ENST00000570510 H0YC42 278 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 UGDHO60701 494 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 KLHL2O95198 593 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 AIFM1O95831 613 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 SNRPAP09012 282 aaKnown RBP9.91□□□□□ -0.82
VPS53-207ENST00000570510 CT62P0C5K7 136 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 FAM58BPP0C7Q3 252 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 CD22P20273 847 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 GRK2P25098 689 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 IL12BP29460 328 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 TYK2P29597 1187 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 SRP14P37108 136 aaKnown RBP9.91□□□□□ -0.82
VPS53-207ENST00000570510 XKP51811 444 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 SUCLG1P53597 346 aaKnown RBP9.91□□□□□ -0.82
VPS53-207ENST00000570510 TPD52P55327 224 aaPredicted RBP9.91□□□□□ -0.82
VPS53-207ENST00000570510 NAA20P61599 178 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 ACTG1P63261 375 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 BSPH1Q075Z2 132 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 ZNF619Q8N2I2 560 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 KBTBD8Q8NFY9 601 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 ACMSDQ8TDX5 336 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 HSD17B8Q92506 261 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 ESAMQ96AP7 390 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 GMPPAQ96IJ6 420 aaPredicted RBP9.91□□□□□ -0.82
VPS53-207ENST00000570510 CACNG6Q9BXT2 260 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 ITPAQ9BY32 194 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 TXLNGYQ9BZA5 131 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 PTGES2Q9H7Z7 377 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 MCTS1Q9ULC4 181 aaKnown RBP9.91□□□□□ -0.82
VPS53-207ENST00000570510 ZNF337Q9Y3M9 751 aa9.91□□□□□ -0.82
VPS53-207ENST00000570510 A0A1W2PR48 441 aa9.9□□□□□ -0.82
VPS53-207ENST00000570510 ELOA3DA6NLF2 546 aaPredicted RBP9.9□□□□□ -0.82
VPS53-207ENST00000570510 PLPP1O14494 284 aa9.9□□□□□ -0.82
VPS53-207ENST00000570510 PRAMEF4O60810 478 aa9.9□□□□□ -0.82
VPS53-207ENST00000570510 AQP8O94778 261 aa9.9□□□□□ -0.82
VPS53-207ENST00000570510 SYNGR4O95473 234 aa9.9□□□□□ -0.82
VPS53-207ENST00000570510 C2P06681 752 aa9.9□□□□□ -0.82
VPS53-207ENST00000570510 BMP4P12644 408 aa9.9□□□□□ -0.82
VPS53-207ENST00000570510 ITGA2P17301 1181 aa9.9□□□□□ -0.82
VPS53-207ENST00000570510 PSMB1P20618 241 aaKnown RBP9.9□□□□□ -0.82
VPS53-207ENST00000570510 PTNP21246 168 aa9.9□□□□□ -0.82
VPS53-207ENST00000570510 PTX3P26022 381 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms