RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 TMED5Q9Y3A6 229 aa4.36□□□□□ -1.71
CLK3-219ENST00000567805 MRPS18CQ9Y3D5 142 aaKnown RBP4.36□□□□□ -1.71
CLK3-219ENST00000567805 OR10H1Q9Y4A9 318 aa4.36□□□□□ -1.71
CLK3-219ENST00000567805 DNAJC15Q9Y5T4 150 aa4.36□□□□□ -1.71
CLK3-219ENST00000567805 PTGDR2Q9Y5Y4 395 aa4.36□□□□□ -1.71
CLK3-219ENST00000567805 NOTCH2Q04721 2471 aa4.36□□□□□ -1.71
CLK3-219ENST00000567805 MYO9AB2RTY4 2548 aa4.36□□□□□ -1.71
CLK3-219ENST00000567805 MBD3L4A6NDZ8 208 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 MBD3L3A6NE82 208 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 MBD3L5A6NJ08 208 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 TTC36A6NLP5 189 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 TMEM114B3SHH9 223 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 UPK1AO00322 258 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 SYT5O00445 386 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 PDPK1O15530 556 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 SPAG7O75391 227 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 NME6O75414 186 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 SLU7O95391 586 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 IL33O95760 270 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 IL2RAP01589 272 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 CHRNGP07510 517 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 FGF4P08620 206 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 LINC00032P0C843 101 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 CYP4B1P13584 511 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 CPN1P15169 458 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 DDX5P17844 614 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 SDC1P18827 310 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 BMP5P22003 454 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 CHMP24386 653 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 GRK2P25098 689 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 TACR1P25103 407 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 SRD5A2P31213 254 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 GPC1P35052 558 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 FRKP42685 505 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 ASMTP46597 345 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 CLK3P49761 638 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 LHX2P50458 406 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 ASCL1P50553 236 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 GAS1P54826 345 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 PSMD4P55036 377 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 MANFP55145 182 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 GFRA1P56159 465 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 DSCR4P56555 118 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 RPL38P63173 70 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 HSPB3Q12988 150 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 PDE7AQ13946 482 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 RCAN2Q14206 197 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 GANABQ14697 944 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 DECR1Q16698 335 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 UGT3A2Q3SY77 523 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 FBXL19-AS1Q494R0 122 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 GALNTL6Q49A17 601 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 VPS26BQ4G0F5 336 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 RFTN2Q52LD8 501 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 ARL13AQ5H913 290 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 SH2D4BQ5SQS7 431 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 DCST1Q5T197 706 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 CES4AQ5XG92 561 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 AAGABQ6PD74 315 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 ENPP6Q6UWR7 440 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 Q6ZSR9 355 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 SEM1Q6ZVN7 128 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 R3HCC1LQ7Z5L2 792 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 YRDCQ86U90 279 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 LIX1LQ8IVB5 337 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 TRIM42Q8IWZ5 723 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 DDIASQ8IXT1 998 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 MREGQ8N565 214 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 NAXEQ8NCW5 288 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 TNIP2Q8NFZ5 429 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 OR4N2Q8NGD1 307 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 OR2T11Q8NH01 316 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 CEP70Q8NHQ1 597 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 ZFP28Q8NHY6 868 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 MBD3L2Q8NHZ7 208 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 TCP10LQ8TDR4 215 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 TWIST2Q8WVJ9 160 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 HOXB13Q92826 284 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 HPS1Q92902 700 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 GFM2Q969S9 779 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 EFHD2Q96C19 240 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 PPCDCQ96CD2 204 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 MTERF3Q96E29 417 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 ZBED6CLQ96FA7 236 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 ZFP3Q96NJ6 502 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 TSSK3Q96PN8 268 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 TRIB1Q96RU8 372 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 ZNF559Q9BR84 538 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 LMF2Q9BU23 707 aaKnown RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 MECRQ9BV79 373 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 TMEM109Q9BVC6 243 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 TUBB1Q9H4B7 451 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 REEP4Q9H6H4 257 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 C3orf14Q9HBI5 128 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 Q9N2J8 555 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 SDHAF3Q9NRP4 125 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 ACSS1Q9NUB1 689 aaPredicted RBP4.35□□□□□ -1.71
CLK3-219ENST00000567805 TAS2R10Q9NYW0 307 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 NTMQ9P121 344 aa4.35□□□□□ -1.71
CLK3-219ENST00000567805 PPP4R1LQ9P1A2 415 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms