RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 FAM71E1Q6IPT2 247 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 GRAMD2AQ8IUY3 354 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 OR4K17Q8NGC6 315 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 MZB1Q8WU39 189 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 TXLNGYQ9BZA5 131 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 SENP1Q9P0U3 644 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 EMCNQ9ULC0 261 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 GRID1Q9ULK0 1009 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 OR10H1Q9Y4A9 318 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 NSD1Q96L73 2696 aaPredicted RBP15.48■□□□□ 0.07
CLN3-216ENST00000565316 MSTNO14793 375 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 PYGBP11216 843 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 PEPDP12955 493 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 FOXA1P55317 472 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 CLDN15P56746 228 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 C2orf80Q0P641 193 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 ZNF155Q12901 538 aaPredicted RBP15.47■□□□□ 0.07
CLN3-216ENST00000565316 TRIM46Q7Z4K8 759 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 OR2L13Q8N349 312 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 OR2M3Q8NG83 312 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 FAM76AQ8TAV0 307 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 ZNF592Q92610 1267 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 STARD4Q96DR4 205 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 DSN1Q9H410 356 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 MID1IP1Q9NPA3 183 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 MYNNQ9NPC7 610 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 PPP4R1LQ9P1A2 415 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 PSMC3IPQ9P2W1 217 aaPredicted RBP15.47■□□□□ 0.07
CLN3-216ENST00000565316 DCDC2Q9UHG0 476 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 ABCG2Q9UNQ0 655 aa15.47■□□□□ 0.07
CLN3-216ENST00000565316 G3V2L1 256 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 GOLGA8RI6L899 631 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 JUNP05412 331 aaKnown RBP15.46■□□□□ 0.07
CLN3-216ENST00000565316 IFI6P09912 130 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 CD53P19397 219 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 HOXC12P31275 282 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 MC3RP41968 323 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 NCBP2P52298 156 aaKnown RBP eCLIP15.46■□□□□ 0.07
CLN3-216ENST00000565316 NAA20P61599 178 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 SPDYAQ5MJ70 313 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 OR2A2Q6IF42 318 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 SH2D5Q6ZV89 423 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 CCDC126Q96EE4 140 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 GLIPR2Q9H4G4 154 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 FAM120CQ9NX05 1096 aaKnown RBP15.46■□□□□ 0.07
CLN3-216ENST00000565316 TESMINQ9Y4I5 508 aa15.46■□□□□ 0.07
CLN3-216ENST00000565316 SLC22A20A6NK97 555 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 H3BQF6 201 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 LINC01387J3KSC0 135 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 UPK1AO00322 258 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 SCO2O43819 266 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 SLC29A2Q14542 456 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 GANABQ14697 944 aaKnown RBP15.45■□□□□ 0.06
CLN3-216ENST00000565316 DECR1Q16698 335 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 TMEM107Q6UX40 140 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 ZYG11AQ6WRX3 759 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 IFT20Q8IY31 132 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 CCNYL1Q8N7R7 359 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 WFDC11Q8NEX6 87 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 ELP4Q96EB1 424 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 AMDHD1Q96NU7 426 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 LMF2Q9BU23 707 aaKnown RBP15.45■□□□□ 0.06
CLN3-216ENST00000565316 RTN4RQ9BZR6 473 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 GSX1Q9H4S2 264 aaPredicted RBP15.45■□□□□ 0.06
CLN3-216ENST00000565316 SDHAF3Q9NRP4 125 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 BEX4Q9NWD9 120 aaPredicted RBP15.45■□□□□ 0.06
CLN3-216ENST00000565316 FLRT3Q9NZU0 649 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 NDRG3Q9UGV2 375 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 ABCA2Q9BZC7 2435 aa15.45■□□□□ 0.06
CLN3-216ENST00000565316 IGLV3-32A0A0A0MS00 114 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 CASKO14936 926 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 TNFRSF21O75509 655 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 RSL1D1O76021 490 aaKnown RBP15.44■□□□□ 0.06
CLN3-216ENST00000565316 IL33O95760 270 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 FAM153BP0C7A2 387 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 HK1P19367 917 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 TCEA1P23193 301 aaKnown RBP15.44■□□□□ 0.06
CLN3-216ENST00000565316 KIR2DL2P43627 348 aaPredicted RBP15.44■□□□□ 0.06
CLN3-216ENST00000565316 SUCLG1P53597 346 aaKnown RBP15.44■□□□□ 0.06
CLN3-216ENST00000565316 EEFSECP57772 596 aaKnown RBP15.44■□□□□ 0.06
CLN3-216ENST00000565316 OCRLQ01968 901 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 FAM27E3Q08E93 113 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 POU4F3Q15319 338 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 FAM153CQ494X1 144 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 GLYR1Q49A26 553 aaPredicted RBP15.44■□□□□ 0.06
CLN3-216ENST00000565316 NOXRED1Q6NXP6 359 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 ZNF474Q6S9Z5 364 aaPredicted RBP15.44■□□□□ 0.06
CLN3-216ENST00000565316 FRMD7Q6ZUT3 714 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 IKBIPQ70UQ0 350 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 CHMP1BQ7LBR1 199 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 P4HA3Q7Z4N8 544 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 CXorf67Q86X51 503 aaPredicted RBP15.44■□□□□ 0.06
CLN3-216ENST00000565316 KRTAP1-3Q8IUG1 177 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 MEIOBQ8N635 442 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 METTL2AQ96IZ6 378 aaKnown RBP15.44■□□□□ 0.06
CLN3-216ENST00000565316 NEUROD4Q9HD90 331 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 MIEF1Q9NQG6 463 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 MED11Q9P086 117 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 ZNF337Q9Y3M9 751 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 ZNF175Q9Y473 711 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms