RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TGIF2Q9GZN2 237 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 RBM38Q9H0Z9 239 aaKnown RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 SERHL2Q9H4I8 314 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 POLR1BQ9H9Y6 1135 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 C12orf10Q9HB07 376 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 SLC25A19Q9HC21 320 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 ZNF304Q9HCX3 659 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 EQTNQ9NQ60 294 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 NECTIN3Q9NQS3 549 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 EXOSC3Q9NQT5 275 aaKnown RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 CHCHD3Q9NX63 227 aaKnown RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.01□□□□□ -1.29
VPS39-204ENST00000561818 PCDHGB5Q9Y5G0 923 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 HEMK1Q9Y5R4 338 aaPredicted RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 DOCK9Q9BZ29 2069 aa7□□□□□ -1.29
VPS39-204ENST00000561818 A0A0A6YYC8 382 aaPredicted RBP7□□□□□ -1.29
VPS39-204ENST00000561818 A0A1B0GVT2 93 aa7□□□□□ -1.29
VPS39-204ENST00000561818 EME2A4GXA9 379 aaPredicted RBP7□□□□□ -1.29
VPS39-204ENST00000561818 CDHR4A6H8M9 788 aa7□□□□□ -1.29
VPS39-204ENST00000561818 FRG2CA6NGY1 282 aa7□□□□□ -1.29
VPS39-204ENST00000561818 TMEM229AB2RXF0 380 aa7□□□□□ -1.29
VPS39-204ENST00000561818 H3BN98 237 aa7□□□□□ -1.29
VPS39-204ENST00000561818 I3L1I5 382 aaPredicted RBP7□□□□□ -1.29
VPS39-204ENST00000561818 HRO43593 1189 aa7□□□□□ -1.29
VPS39-204ENST00000561818 FOXS1O43638 330 aa7□□□□□ -1.29
VPS39-204ENST00000561818 B4GALT2O60909 372 aa7□□□□□ -1.29
VPS39-204ENST00000561818 SEC14L2O76054 403 aa7□□□□□ -1.29
VPS39-204ENST00000561818 RCBTB2O95199 551 aa7□□□□□ -1.29
VPS39-204ENST00000561818 ONECUT2O95948 504 aa7□□□□□ -1.29
VPS39-204ENST00000561818 IFNA16P05015 189 aa7□□□□□ -1.29
VPS39-204ENST00000561818 DCNP07585 359 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 NGFRP08138 427 aa7□□□□□ -1.29
VPS39-204ENST00000561818 C8orf89P0DMQ9 161 aa7□□□□□ -1.29
VPS39-204ENST00000561818 PNMTP11086 282 aa7□□□□□ -1.29
VPS39-204ENST00000561818 CDK4P11802 303 aa7□□□□□ -1.29
VPS39-204ENST00000561818 BMP7P18075 431 aa7□□□□□ -1.29
VPS39-204ENST00000561818 PPICP45877 212 aa7□□□□□ -1.29
VPS39-204ENST00000561818 OR1E2P47887 323 aa7□□□□□ -1.29
VPS39-204ENST00000561818 LSSP48449 732 aa7□□□□□ -1.29
VPS39-204ENST00000561818 IDH2P48735 452 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 TMED10P49755 219 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 CLK3P49761 638 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 IST1P53990 364 aa7□□□□□ -1.29
VPS39-204ENST00000561818 ATP12AP54707 1039 aa7□□□□□ -1.29
VPS39-204ENST00000561818 EEF1A1P68104 462 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 TFF2Q03403 129 aa7□□□□□ -1.29
VPS39-204ENST00000561818 OCA2Q04671 838 aa7□□□□□ -1.29
VPS39-204ENST00000561818 OCLNQ16625 522 aa7□□□□□ -1.29
VPS39-204ENST00000561818 DUSP5Q16690 384 aa7□□□□□ -1.29
VPS39-204ENST00000561818 PRSS53Q2L4Q9 553 aa7□□□□□ -1.29
VPS39-204ENST00000561818 CNPY1Q3B7I2 92 aa7□□□□□ -1.29
VPS39-204ENST00000561818 PLK5Q496M5 336 aa7□□□□□ -1.29
VPS39-204ENST00000561818 KLHL22Q53GT1 634 aa7□□□□□ -1.29
VPS39-204ENST00000561818 RPS26P11Q5JNZ5 115 aaPredicted RBP7□□□□□ -1.29
VPS39-204ENST00000561818 SLX4IPQ5VYV7 408 aa7□□□□□ -1.29
VPS39-204ENST00000561818 HLA-DQA1Q5Y7H0 255 aa7□□□□□ -1.29
VPS39-204ENST00000561818 TYW3Q6IPR3 259 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 RHBDD2Q6NTF9 364 aa7□□□□□ -1.29
VPS39-204ENST00000561818 SLC27A4Q6P1M0 643 aa7□□□□□ -1.29
VPS39-204ENST00000561818 SLC23A3Q6PIS1 610 aa7□□□□□ -1.29
VPS39-204ENST00000561818 ZC3H14Q6PJT7 736 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 RBM44Q6ZP01 1051 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 PTCHD4Q6ZW05 846 aa7□□□□□ -1.29
VPS39-204ENST00000561818 MBOAT2Q6ZWT7 520 aa7□□□□□ -1.29
VPS39-204ENST00000561818 ZNF367Q7RTV3 350 aa7□□□□□ -1.29
VPS39-204ENST00000561818 GALNT5Q7Z7M9 940 aa7□□□□□ -1.29
VPS39-204ENST00000561818 EGFL6Q8IUX8 553 aa7□□□□□ -1.29
VPS39-204ENST00000561818 CROCCP3Q8IVE0 287 aa7□□□□□ -1.29
VPS39-204ENST00000561818 SLC35F3Q8IY50 421 aa7□□□□□ -1.29
VPS39-204ENST00000561818 LSMEM1Q8N8F7 131 aa7□□□□□ -1.29
VPS39-204ENST00000561818 SLC16A11Q8NCK7 471 aa7□□□□□ -1.29
VPS39-204ENST00000561818 OR4K5Q8NGD3 323 aa7□□□□□ -1.29
VPS39-204ENST00000561818 OR52R1Q8NGF1 315 aa7□□□□□ -1.29
VPS39-204ENST00000561818 OR13F1Q8NGS4 319 aa7□□□□□ -1.29
VPS39-204ENST00000561818 OR9A4Q8NGU2 314 aa7□□□□□ -1.29
VPS39-204ENST00000561818 HAVCR2Q8TDQ0 301 aa7□□□□□ -1.29
VPS39-204ENST00000561818 DIO2Q92813 273 aa7□□□□□ -1.29
VPS39-204ENST00000561818 KAT2AQ92830 837 aa7□□□□□ -1.29
VPS39-204ENST00000561818 CDS1Q92903 461 aa7□□□□□ -1.29
VPS39-204ENST00000561818 ANKRD9Q96BM1 317 aaPredicted RBP7□□□□□ -1.29
VPS39-204ENST00000561818 HSPBAP1Q96EW2 488 aa7□□□□□ -1.29
VPS39-204ENST00000561818 SLC35A4Q96G79 324 aa7□□□□□ -1.29
VPS39-204ENST00000561818 MRPL48Q96GC5 212 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 PLEKHA8Q96JA3 519 aa7□□□□□ -1.29
VPS39-204ENST00000561818 VSTM2LQ96N03 204 aa7□□□□□ -1.29
VPS39-204ENST00000561818 COPS4Q9BT78 406 aa7□□□□□ -1.29
VPS39-204ENST00000561818 POLDIP3Q9BY77 421 aaKnown RBP7□□□□□ -1.29
VPS39-204ENST00000561818 FN3KQ9H479 309 aa7□□□□□ -1.29
VPS39-204ENST00000561818 GPN2Q9H9Y4 310 aaPredicted RBP7□□□□□ -1.29
VPS39-204ENST00000561818 SIAEQ9HAT2 523 aa7□□□□□ -1.29
VPS39-204ENST00000561818 FAM60AQ9NP50 221 aa7□□□□□ -1.29
VPS39-204ENST00000561818 VNN3Q9NY84 501 aa7□□□□□ -1.29
VPS39-204ENST00000561818 RPS6KB2Q9UBS0 482 aa7□□□□□ -1.29
VPS39-204ENST00000561818 RARRES3Q9UL19 164 aa7□□□□□ -1.29
VPS39-204ENST00000561818 SLC6A14Q9UN76 642 aa7□□□□□ -1.29
VPS39-204ENST00000561818 A4GNTQ9UNA3 340 aa7□□□□□ -1.29
VPS39-204ENST00000561818 OR10H1Q9Y4A9 318 aa7□□□□□ -1.29
VPS39-204ENST00000561818 PCDHGA6Q9Y5G7 932 aa7□□□□□ -1.29
VPS39-204ENST00000561818 CLCA3PQ9Y6N3 262 aa7□□□□□ -1.29
VPS39-204ENST00000561818 TMEM131Q92545 1883 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms