RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SF3B4Q15427 424 aaKnown RBP eCLIP17.2■□□□□ 0.34
VPS35-202ENST00000561713 CLEC6AQ6EIG7 209 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 ANKRD26P1Q6NSI1 321 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 OR4K17Q8NGC6 315 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 UBLCP1Q8WVY7 318 aaPredicted RBP17.2■□□□□ 0.34
VPS35-202ENST00000561713 INTS12Q96CB8 462 aaKnown RBP17.2■□□□□ 0.34
VPS35-202ENST00000561713 ZNF395Q9H8N7 513 aaPredicted RBP17.2■□□□□ 0.34
VPS35-202ENST00000561713 CLCF1Q9UBD9 225 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 FETUBQ9UGM5 382 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 FIS1Q9Y3D6 152 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 ZANQ9Y493 2812 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 CCDC151A5D8V7 595 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 MYO1GB0I1T2 1018 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 PLOD2O00469 737 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 PLOD3O60568 738 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 PLIN3O60664 434 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 ABCB7O75027 752 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 BCAS2O75934 225 aaPredicted RBP17.19■□□□□ 0.34
VPS35-202ENST00000561713 CLDN18P56856 261 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 PSG6Q00889 435 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 EFR3AQ14156 821 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 FAM71E1Q6IPT2 247 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 ENPP6Q6UWR7 440 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 CXorf67Q86X51 503 aaPredicted RBP17.19■□□□□ 0.34
VPS35-202ENST00000561713 PRIMA1Q86XR5 153 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 UBQLNLQ8IYU4 475 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 SAMD14Q8IZD0 417 aaPredicted RBP17.19■□□□□ 0.34
VPS35-202ENST00000561713 C4orf33Q8N1A6 199 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 CCDC63Q8NA47 563 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 ZPLD1Q8TCW7 415 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 RNF138Q8WVD3 245 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 GFM2Q969S9 779 aaKnown RBP17.19■□□□□ 0.34
VPS35-202ENST00000561713 ERP27Q96DN0 273 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 RTN4RQ9BZR6 473 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 GLIPR2Q9H4G4 154 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 CALHM2Q9HA72 323 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 MYNNQ9NPC7 610 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 GALNT8Q9NY28 637 aa17.19■□□□□ 0.34
VPS35-202ENST00000561713 GMFGO60234 142 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 COQ9O75208 318 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 GOSR1O95249 250 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 LY6G6DO95868 133 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 IL18BPO95998 194 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 CPN1P15169 458 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 DPP4P27487 766 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 NTSP30990 170 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 MPIP34949 423 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 CPA2P48052 419 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 CFAP157Q5JU67 520 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 SHEQ5VZ18 495 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 SH2D5Q6ZV89 423 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 GRAMD2AQ8IUY3 354 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 OR5M1Q8NGP8 315 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 FBXO30Q8TB52 745 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 EGLN2Q96KS0 407 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 DACH2Q96NX9 599 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 MDFIQ99750 246 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 RBM24Q9BX46 236 aaKnown RBP17.18■□□□□ 0.34
VPS35-202ENST00000561713 DSN1Q9H410 356 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 EQTNQ9NQ60 294 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 DDX18Q9NVP1 670 aaKnown RBP17.18■□□□□ 0.34
VPS35-202ENST00000561713 TAS2R9Q9NYW1 312 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 PPP4R1LQ9P1A2 415 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 DCDC2Q9UHG0 476 aa17.18■□□□□ 0.34
VPS35-202ENST00000561713 KIAA1324LA8MWY0 1029 aaPredicted RBP17.17■□□□□ 0.34
VPS35-202ENST00000561713 H0YC42 278 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 UPK1AO00322 258 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 TGM6O95932 706 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 ZNF708P17019 499 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 CPOXP36551 454 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 TPD52P55327 224 aaPredicted RBP17.17■□□□□ 0.34
VPS35-202ENST00000561713 B3GALT5-AS1P59052 145 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 HSPB3Q12988 150 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 RAET1LQ5VY80 246 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 ADGRE4PQ86SQ3 457 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 CIARTQ8N365 385 aaPredicted RBP17.17■□□□□ 0.34
VPS35-202ENST00000561713 CLHC1Q8NHS4 586 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.17■□□□□ 0.346e-7■■■□□ 14.6
VPS35-202ENST00000561713 NUDT8Q8WV74 236 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 CCDC126Q96EE4 140 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 AMDHD1Q96NU7 426 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 SIRT5Q9NXA8 310 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 MED11Q9P086 117 aa17.17■□□□□ 0.34
VPS35-202ENST00000561713 NUP214P35658 2090 aaPredicted RBP17.16■□□□□ 0.34
VPS35-202ENST00000561713 SERTM1A2A2V5 107 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 SH3D21A4FU49 640 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 ZIC3O60481 467 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 RSL1D1O76021 490 aaKnown RBP17.16■□□□□ 0.34
VPS35-202ENST00000561713 PSMG1O95456 288 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 PNLIPRP2P54317 469 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 NOXRED1Q6NXP6 359 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 AAGABQ6PD74 315 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 ZNF551Q7Z340 670 aaPredicted RBP17.16■□□□□ 0.34
VPS35-202ENST00000561713 GALNT10Q86SR1 603 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 OR2M3Q8NG83 312 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 OR2T11Q8NH01 316 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 CIDECQ96AQ7 238 aaPredicted RBP17.16■□□□□ 0.34
VPS35-202ENST00000561713 SFXN3Q9BWM7 321 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 STMN4Q9H169 189 aaPredicted RBP17.16■□□□□ 0.34
VPS35-202ENST00000561713 C19orf53Q9UNZ5 99 aaPredicted RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms