RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CRISP3P54108 245 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 CORO7P57737 925 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 PSME3P61289 254 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 CAPRIN1Q14444 709 aaKnown RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 NTRK2Q16620 822 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 CYP51A1Q16850 503 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.51□□□□□ -1.05
LDLR-210ENST00000559340 ZNF630Q2M218 657 aaPredicted RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 SPATS1Q496A3 300 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 GTDC1Q4AE62 458 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 GPAT3Q53EU6 434 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 DCST2Q5T1A1 773 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.51□□□□□ -1.05
LDLR-210ENST00000559340 INTS11Q5TA45 600 aaKnown RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 PRAMEF8Q5VWM4 474 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 PRAMEF7Q5VXH5 474 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 HEPHL1Q6MZM0 1159 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 NPSR1Q6W5P4 371 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 LRRC74BQ6ZQY2 392 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 CCDC121Q6ZUS5 278 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 SERPINA11Q86U17 422 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 KRT73Q86Y46 540 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 PGAM4Q8N0Y7 254 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 CLEC4FQ8N1N0 589 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 ARHGAP24Q8N264 748 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 BCORP1Q8N888 145 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 ZNF527Q8NB42 609 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 TMEM178AQ8NBL3 297 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 FAM98AQ8NCA5 519 aaKnown RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 C11orf65Q8NCR3 313 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 FAM13CQ8NE31 585 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 CHDHQ8NE62 594 aaPredicted RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 FAM110BQ8TC76 370 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 PNPT1Q8TCS8 783 aaKnown RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 AURKBQ96GD4 344 aaPredicted RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 ABHD17AQ96GS6 310 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 TRNT1Q96Q11 434 aaKnown RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 SDF2Q99470 211 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 CPPED1Q9BRF8 314 aaPredicted RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 C1orf21Q9H246 121 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 TMEM38AQ9H6F2 299 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 MTHFD2LQ9H903 347 aaPredicted RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 ZBTB20Q9HC78 741 aaPredicted RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 SDHAF3Q9NRP4 125 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 SLC6A13Q9NSD5 602 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 DTX4Q9Y2E6 619 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 KLF13Q9Y2Y9 288 aaPredicted RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 PCDHGB6Q9Y5F9 930 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 DNAJC13O75165 2243 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 SVILO95425 2214 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 GTF3C1Q12789 2109 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 FREM2Q5SZK8 3169 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 A0A0G2JPF8 293 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 GXYLT2A0PJZ3 443 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 HNRNPCL2B2RXH8 293 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 HNRNPCL3B7ZW38 293 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 H3BNH8 94 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 KLRC4-KLRK1H3BQV0 150 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 HMGN4O00479 90 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 SLC28A2O43868 658 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 PDE9AO76083 593 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 OR6B1O95007 311 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 CBX6O95503 412 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 HNRNPCL4P0DMR1 293 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 ETFAP13804 333 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 CD1EP15812 388 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 CD96P40200 585 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 CPA2P48052 419 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 RFX3P48380 749 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 EEFSECP57772 596 aaKnown RBP8.5□□□□□ -1.05
LDLR-210ENST00000559340 RPS26P62854 115 aaKnown RBP8.5□□□□□ -1.05
LDLR-210ENST00000559340 SNTA1Q13424 505 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 TUBA3CQ13748 450 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 OR1C1Q15619 314 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 NNATQ16517 81 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 ZSWIM7Q19AV6 140 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 ZNF791Q3KP31 576 aaPredicted RBP8.5□□□□□ -1.05
LDLR-210ENST00000559340 LINC00303Q3SY05 128 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 DNAL1Q4LDG9 190 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 COX20Q5RI15 118 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 SLC25A25Q6KCM7 469 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 REEP3Q6NUK4 255 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 SLC30A6Q6NXT4 461 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 TMEM81Q6P7N7 255 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 TUBA3EQ6PEY2 450 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 C6orf89Q6UWU4 347 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 C16orf47Q6ZP98 133 aaPredicted RBP8.5□□□□□ -1.05
LDLR-210ENST00000559340 ASB18Q6ZVZ8 466 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 WDR53Q7Z5U6 358 aaPredicted RBP8.5□□□□□ -1.05
LDLR-210ENST00000559340 MSRB3Q8IXL7 192 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 PRR22Q8IZ63 422 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 OR5D16Q8NGK9 328 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 OR10A6Q8NH74 314 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 FBXO30Q8TB52 745 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 PIK3R3Q92569 461 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 RAB8BQ92930 207 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 CRELD1Q96HD1 420 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 ZNF607Q96SK3 696 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 ADOQ96SZ5 270 aa8.5□□□□□ -1.05
LDLR-210ENST00000559340 GPATCH1Q9BRR8 931 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms