RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 B3GLCTQ6Y288 498 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 PLEKHM3Q6ZWE6 761 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 NRMQ8IXM6 262 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 ZNF614Q8N883 585 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 GPR151Q8TDV0 419 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 ZDHHC1Q8WTX9 485 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 FCGR1BQ92637 280 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 OTULINQ96BN8 352 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 MOAP1Q96BY2 351 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 GSDMCQ9BYG8 508 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 SLC25A19Q9HC21 320 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 USP36Q9P275 1121 aaKnown RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 PHF11Q9UIL8 331 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 HS3ST3A1Q9Y663 406 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 A0A0A6YYC8 382 aaPredicted RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 SLC9B1P1A6NJY1 282 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 I3L1I5 382 aaPredicted RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 HRKO00198 91 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 CASC3O15234 703 aaKnown RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 HYAL3O43820 417 aaPredicted RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 MRPS14O60783 128 aaKnown RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 RPLP0P05388 317 aaKnown RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 SERPINB10P48595 397 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 PCYT1AP49585 367 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 SFSWAPQ12872 951 aaKnown RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 SSX1Q16384 188 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 KIAA0895LQ68EN5 471 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 CDC73Q6P1J9 531 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 ZNF836Q6ZNA1 936 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 Q6ZNX1 250 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 DCDC5Q6ZRR9 648 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 OR2L13Q8N349 312 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 OR8J1Q8NGP2 316 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 TMEM203Q969S6 136 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 SDF2Q99470 211 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 SAP130Q9H0E3 1048 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 AKIP1Q9NQ31 210 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 HCN3Q9P1Z3 774 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 KLHL3Q9UH77 587 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 KCNE5Q9UJ90 142 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 OSGIN1Q9UJX0 560 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 GXYLT2A0PJZ3 443 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 SH3D21A4FU49 640 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 URADA6NGE7 173 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 AGRPO00253 132 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 CYR61O00622 381 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 DSCR3O14972 297 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 MPZL2O60487 215 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 SDC3O75056 442 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 MED26O95402 600 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 GNSP15586 552 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 CDH3P22223 829 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 SLC15A1P46059 708 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 DNASE1L3Q13609 305 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 NNATQ16517 81 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 SYT14P1Q58G82 188 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 ZNF628Q5EBL2 1059 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 ZAR1Q86SH2 424 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 OR6Q1Q8NGQ2 317 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 DIO2Q92813 273 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 LRRC61Q9BV99 259 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 MIR1-1HGQ9H1L0 117 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 TTYH1Q9H313 450 aaPredicted RBP9.9□□□□□ -0.82
CUX1-217ENST00000558836 POT1Q9NUX5 634 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 WDR70Q9NW82 654 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 SLC7A7Q9UM01 511 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 LIPT1Q9Y234 373 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 ZNF443Q9Y2A4 671 aaPredicted RBP9.9□□□□□ -0.82
CUX1-217ENST00000558836 ALPK2Q86TB3 2170 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 A0A0J9YY10 115 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 AP3D1O14617 1153 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 CSO75390 466 aaKnown RBP9.9□□□□□ -0.82
CUX1-217ENST00000558836 SLC2A10O95528 541 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 OCM2P0CE71 109 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 OCMP0CE72 109 aaPredicted RBP9.9□□□□□ -0.82
CUX1-217ENST00000558836 TGM4P49221 684 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 SNRPGP62308 76 aaKnown RBP9.9□□□□□ -0.82
CUX1-217ENST00000558836 FBXO43Q4G163 708 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 LIPKQ5VXJ0 399 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 USP53Q70EK8 1073 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 GDF7Q7Z4P5 450 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 CYP4Z2PQ8N1L4 340 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 OR4N2Q8NGD1 307 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 KLHDC7BQ96G42 594 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 CDCA4Q9BXL8 241 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 LMAN1LQ9HAT1 526 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 HMG20AQ9NP66 347 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 KLHL28Q9NXS3 571 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 WSB2Q9NYS7 404 aaPredicted RBP9.9□□□□□ -0.82
CUX1-217ENST00000558836 ERGIC3Q9Y282 383 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 LRP4O75096 1905 aa9.9□□□□□ -0.82
CUX1-217ENST00000558836 SMIM30A4D0T7 59 aa9.9□□□□□ -0.83
CUX1-217ENST00000558836 DUXAA6NLW8 204 aa9.9□□□□□ -0.83
CUX1-217ENST00000558836 CDC42EP2O14613 210 aa9.9□□□□□ -0.83
CUX1-217ENST00000558836 KIAA0513O60268 411 aa9.9□□□□□ -0.83
CUX1-217ENST00000558836 GALR3O60755 368 aaPredicted RBP9.9□□□□□ -0.83
CUX1-217ENST00000558836 GPX5O75715 221 aa9.9□□□□□ -0.83
CUX1-217ENST00000558836 HBQ1P09105 142 aa9.9□□□□□ -0.83
CUX1-217ENST00000558836 GABRA3P34903 492 aa9.9□□□□□ -0.83
CUX1-217ENST00000558836 ARFIP1P53367 373 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms