RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 IMP3Q9NV31 184 aaKnown RBP11.58□□□□□ -0.56
LDLR-205ENST00000557933 RASD1Q9Y272 281 aa11.58□□□□□ -0.56
LDLR-205ENST00000557933 NPIPA5A0A0B4J1W7 369 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 CENPVL1A0A0U1RR11 272 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 LOC105371267A0A1B0GV96 52 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 NPIPA7E9PJI5 369 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ORC5O43913 435 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 SNRNP200O75643 2136 aaKnown RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 GATBO75879 557 aaKnown RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 C1QBP02746 253 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 MT-ND4P03905 459 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 NPIPA8P0DM63 369 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ACP5P13686 325 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 GIFP27352 417 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 PRLHRP49683 370 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ZNF81P51508 661 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 POLR2LP62875 67 aaKnown RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 CRYZQ08257 329 aaKnown RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 ZMYND11Q15326 602 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 TCEAL5Q5H9L2 206 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 FAAP20Q6NZ36 180 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 CHMP1BQ7LBR1 199 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ADIPOR2Q86V24 386 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 OR10H4Q8NGA5 316 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 HSD17B8Q92506 261 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 AKAP1Q92667 903 aaKnown RBP eCLIP11.57□□□□□ -0.568e-10■■■■■ 35.9
LDLR-205ENST00000557933 RELTQ969Z4 430 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ZNF689Q96CS4 500 aaPredicted RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 NEURL3Q96EH8 262 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 SLC35G5Q96KT7 338 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 POLDIP3Q9BY77 421 aaKnown RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 MED28Q9H204 178 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 LHX9Q9NQ69 397 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ZNF224Q9NZL3 707 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 FLVCR2Q9UPI3 526 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 PRELID1Q9Y255 219 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ASCC3Q8N3C0 2202 aaKnown RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 CDC42EP2O14613 210 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 TGM5O43548 720 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ACP2P11117 423 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 SSR2P43308 183 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 FUT5Q11128 374 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ZNF155Q12901 538 aaPredicted RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 CCNJQ5T5M9 372 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 C18orf63Q68DL7 685 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 VASNQ6EMK4 673 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 OR4N5Q8IXE1 308 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 C9orf62Q8N4C0 152 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 FAM26EQ8N5C1 309 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 TBC1D19Q8N5T2 526 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ZNF655Q8N720 491 aaPredicted RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 TMEM99Q8N816 258 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 MORN4Q8NDC4 146 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 WDR89Q96FK6 387 aaPredicted RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 TEFMQ96QE5 360 aaKnown RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 ZNF607Q96SK3 696 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 GON7Q9BXV9 100 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 NLGN3Q9NZ94 848 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 ENOPH1Q9UHY7 261 aa11.57□□□□□ -0.56
LDLR-205ENST00000557933 PPIEQ9UNP9 301 aaKnown RBP11.57□□□□□ -0.56
LDLR-205ENST00000557933 C4orf51C9J302 202 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 PSMD9O00233 223 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 TSPAN4O14817 238 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 GRM6O15303 877 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 SIGLEC5O15389 551 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 PRODHO43272 600 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 CFDP00746 253 aaPredicted RBP11.56□□□□□ -0.56
LDLR-205ENST00000557933 E2F1Q01094 437 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 ID2Q02363 134 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 SIGLEC14Q08ET2 396 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 NDUFAF5Q5TEU4 345 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 KHDRBS2Q5VWX1 349 aaKnown RBP11.56□□□□□ -0.56
LDLR-205ENST00000557933 GDPGP1Q6ZNW5 385 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 OVCA2Q8WZ82 227 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 AP3S1Q92572 193 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 SAMD8Q96LT4 415 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 BBS4Q96RK4 519 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 THAP7Q9BT49 309 aaPredicted RBP11.56□□□□□ -0.56
LDLR-205ENST00000557933 DPH7Q9BTV6 452 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 ZSCAN5AQ9BUG6 496 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 NCKAP1Q9Y2A7 1128 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 CDH10Q9Y6N8 788 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 A0A1W2PRG6 482 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 GNB5O14775 395 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 CHP2O43745 196 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 SERPINI2O75830 405 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 GKN3PP0CG01 181 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 FAM157BP0CG42 384 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 POLR2EP19388 210 aaKnown RBP11.56□□□□□ -0.56
LDLR-205ENST00000557933 CLDN20P56880 219 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 C21orf58P58505 322 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 TMEM201Q5SNT2 666 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 SFRP4Q6FHJ7 346 aaPredicted RBP11.56□□□□□ -0.56
LDLR-205ENST00000557933 LYPD4Q6UWN0 246 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 ADGRD2Q7Z7M1 963 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 GLRX5Q86SX6 157 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 TCTE3Q8IZS6 198 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 TRAM1L1Q8N609 369 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 TMEM163Q8TC26 289 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 LRRC20Q8TCA0 184 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms