RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TMCO6Q96DC7 493 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 ZHX1-C8orf76Q96EF9 292 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 MVB12AQ96EY5 273 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 GIMAP5Q96F15 307 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 STACQ99469 402 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 PITX2Q99697 317 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 RIBC2Q9H4K1 309 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 FAM60AQ9NP50 221 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 POLE3Q9NRF9 147 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 DUSP22Q9NRW4 184 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 SOHLH2Q9NX45 425 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 POU2F3Q9UKI9 436 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 ACAD8Q9UKU7 415 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 NDRG4Q9ULP0 352 aaKnown RBP11.83□□□□□ -0.52
SHMT2-229ENST00000557348 TRAPPC4Q9Y296 219 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 GMPPBQ9Y5P6 360 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 FITM1A5D6W6 292 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 METTL15A6NJ78 407 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 H0YIG0 161 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 FAAHO00519 579 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 ADAP00813 363 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 ALPPP05187 535 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 GUSBP08236 651 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 PRKAR1BP31321 381 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 DDOSTP39656 456 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 LIMS1P48059 325 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 PPP1CAP62136 330 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 DUSP2Q05923 314 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 NPRL3Q12980 569 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 ZNF750Q32MQ0 723 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 PROX2Q3B8N5 592 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 EIPR1Q53HC9 387 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 RABEPKQ7Z6M1 372 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 PEX5LQ8IYB4 626 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 SLC7A5P1Q8MH63 180 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 DEPDC4Q8N2C3 294 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 POC5Q8NA72 575 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 OR7G2Q8NG99 324 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 TP53INP1Q96A56 240 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 COL26A1Q96A83 441 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 DGCR6LQ9BY27 220 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 POLR2J2Q9GZM3 115 aaKnown RBP11.82□□□□□ -0.52
SHMT2-229ENST00000557348 POLR2J3Q9H1A7 115 aaKnown RBP11.82□□□□□ -0.52
SHMT2-229ENST00000557348 PIGUQ9H490 435 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 MTHFD2LQ9H903 347 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-229ENST00000557348 PRMT8Q9NR22 394 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-229ENST00000557348 ACER3Q9NUN7 267 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 LRIT1Q9P2V4 623 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 MGAT4BQ9UQ53 548 aa11.82□□□□□ -0.52
SHMT2-229ENST00000557348 ARHGEF17Q96PE2 2063 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-229ENST00000557348 NUP214P35658 2090 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 MDC1Q14676 2089 aaKnown RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ZNF860A6NHJ4 632 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 CHST10O43529 356 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 UGT2B17O75795 530 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 INMTO95050 263 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 LGI1O95970 557 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 H1F0P07305 194 aaKnown RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 CHRM4P08173 479 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 MSL3P1P0C860 447 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 PNLIPP16233 465 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 GALNSP34059 522 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 PIGAP37287 484 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 RPS5P46782 204 aaKnown RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ARL4DP49703 201 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 IL1RL1Q01638 556 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 PPP1R8Q12972 351 aaKnown RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 DNASE1L3Q13609 305 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 NPTX1Q15818 432 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 MEP1AQ16819 746 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 EXOC3L2Q2M3D2 409 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ARHGAP11BQ3KRB8 267 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 TIMM50Q3ZCQ8 353 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 YOD1Q5VVQ6 348 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 TOR1AIP2Q8NFQ8 470 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 GPR32P1Q8NGA4 272 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 KAT2AQ92830 837 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 HRASLS5Q96KN8 279 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 FEVQ99581 238 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ELF4Q99607 663 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ITPAQ9BY32 194 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ANKRD19PQ9H560 264 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 PLCXD1Q9NUJ7 323 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 SEMA5BQ9P283 1151 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 MRPS2Q9Y399 296 aaKnown RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 PCDHGA10Q9Y5H3 936 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 IGHV1OR21-1A0A087WYE8 117 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 A0A1W2PRQ8 180 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 EFCAB9A8MZ26 197 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 TOX3O15405 576 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ZNF749O43361 778 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 TPD52L2O43399 206 aaKnown RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 FGF17O60258 216 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 OR10H2O60403 315 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 MPZL2O60487 215 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 CTNSO60931 367 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 RDH16O75452 317 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 SNRNP200O75643 2136 aaKnown RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 CCNKO75909 580 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 THBS1P07996 1170 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms