RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ADRM1Q16186 407 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 SYPL1Q16563 259 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 DECR1Q16698 335 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 ARHGAP11BQ3KRB8 267 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 NADK2Q4G0N4 442 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 LACTB2Q53H82 288 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-227ENST00000557269 BICRALQ6AI39 1079 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 HACD2Q6Y1H2 254 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 RTL4Q6ZR62 310 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 RINLQ6ZS11 566 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 SLC15A3Q8IY34 581 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 CYP4Z2PQ8N1L4 340 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 ZADH2Q8N4Q0 377 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 FAM13CQ8NE31 585 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 CHDHQ8NE62 594 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-227ENST00000557269 SPPL2AQ8TCT8 520 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 TMEM125Q96AQ2 219 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 ROPN1LQ96C74 230 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 COL21A1Q96P44 957 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 SDF2Q99470 211 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.78□□□□□ -0.52
SHMT2-227ENST00000557269 PIF1Q9H611 641 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 RUBCNLQ9H714 662 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 KAT8Q9H7Z6 458 aaKnown RBP11.78□□□□□ -0.52
SHMT2-227ENST00000557269 PROK2Q9HC23 129 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-227ENST00000557269 USP22Q9UPT9 525 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 PCDHGB7Q9Y5F8 929 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 ATMQ13315 3056 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 NPIPA5A0A0B4J1W7 369 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 CENPVL1A0A0U1RR11 272 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 OR6C70A6NIJ9 312 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 DUXAA6NLW8 204 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 EVPLLA8MZ36 301 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 NPIPA7E9PJI5 369 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 G3V3Y1 287 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 ADAM10O14672 748 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 ICOSLGO75144 302 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 CHRM4P08173 479 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 NPIPA8P0DM63 369 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 PPIBP23284 216 aaKnown RBP11.77□□□□□ -0.53
SHMT2-227ENST00000557269 IL12BP29460 328 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 CPOXP36551 454 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 CASRP41180 1078 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 PTGDSP41222 190 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 PNLIPRP2P54317 469 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 PSME3P61289 254 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 FADDQ13158 208 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.77□□□□□ -0.53
SHMT2-227ENST00000557269 GRAMD1BQ3KR37 738 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 PLEKHN1Q494U1 663 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-227ENST00000557269 PRAMEF20Q5VT98 475 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 Q6ZS92 163 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 NUP54Q7Z3B4 507 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 C16orf62Q7Z3J2 963 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 HMGN2P46Q86SG4 172 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 CALHM3Q86XJ0 350 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 PTOV1Q86YD1 416 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 GPALPP1Q8IXQ4 340 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 OR8J3Q8NGG0 315 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 OR4C3Q8NH37 302 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 OR10A6Q8NH74 314 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 PAQR8Q8TEZ7 354 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 SLC38A5Q8WUX1 472 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 ZG16BQ96DA0 208 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 RTN4RQ9BZR6 473 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 A4GALTQ9NPC4 353 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 KLHL1Q9NR64 748 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 DEPPQ9NTK1 212 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 LUZP4Q9P127 313 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 KCNE5Q9UJ90 142 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 CNOT11Q9UKZ1 510 aaKnown RBP11.77□□□□□ -0.53
SHMT2-227ENST00000557269 PCDHGB3Q9Y5G1 929 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 HRH3Q9Y5N1 445 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 EXPH5Q8NEV8 1989 aa11.77□□□□□ -0.53
SHMT2-227ENST00000557269 EPG5Q9HCE0 2579 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 PINLYPA6NC86 204 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 C2orf72A6NCS6 295 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 C17orf51A8MQB3 221 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 B2RBV5 119 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 NME4O00746 187 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 DPM1O60762 260 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 ABCB7O75027 752 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SLC25A12O75746 678 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 UTS2O95399 124 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 H6PDO95479 791 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SP1P08047 785 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 KRT20P35900 424 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 MAGEA8P43361 318 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 RNF144AP50876 292 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SLC7A2P52569 658 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 PSPHP78330 225 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 CHRNEQ04844 493 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 GPAT3Q53EU6 434 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 ZNF766Q5HY98 468 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 RPS26P11Q5JNZ5 115 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-227ENST00000557269 GCNT6Q5T4J0 391 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 ATAD3BQ5T9A4 648 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SLC22A10Q63ZE4 541 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SLC6A19Q695T7 634 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms