RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ARHGEF7Q14155 803 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 TAS1R3Q7RTX0 852 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 LRRC28Q86X40 367 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 C10orf111Q8N326 155 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 NETO2Q8NC67 525 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 OR5M3Q8NGP4 307 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 RNF139Q8WU17 664 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 MAFIPQ8WZ33 124 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 CPPED1Q9BRF8 314 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 IFT27Q9BW83 186 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 SUCNR1Q9BXA5 334 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 C20orf85Q9H1P6 137 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 PARPBPQ9NWS1 579 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 OR12D3Q9UGF7 316 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 YARS2Q9Y2Z4 477 aaKnown RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 SNX11Q9Y5W9 270 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 A0A0A6YYC8 382 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 A0A1B0GUH1 482 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 NCF1BA6NI72 391 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 NCF1CA8MVU1 366 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 I3L1I5 382 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 WNT9AO14904 365 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 SOD1P00441 154 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 CERS1P27544 350 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 MAP3K8P41279 467 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 SLC7A9P82251 487 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 ABHD18Q0P651 414 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 GAGE1Q13065 139 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 PTGR1Q14914 329 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 SURF2Q15527 256 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 RNASE10Q5GAN6 216 aaKnown RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 PAPD4Q6PIY7 484 aaKnown RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 TMEM207Q6UWW9 146 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 VTCN1Q7Z7D3 282 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 GPR65Q8IYL9 337 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 TRAM1L1Q8N609 369 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 SPPL3Q8TCT6 385 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 PNPLA2Q96AD5 504 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 HSH2DQ96JZ2 352 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF385AQ96PM9 386 aaKnown RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 TEAD3Q99594 435 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 PBX4Q9BYU1 374 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 WDR26Q9H7D7 661 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 SEMA4BQ9NPR2 832 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 PRDM7Q9NQW5 492 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 FXYD6-FXYD2A0A087WZ82 144 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 A0A1W2PPC1 479 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 YDJCA8MPS7 323 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 M0QYT0 321 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 OR2T1O43869 369 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 SCN2BO60939 215 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 ENTPD6O75354 484 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 NCR1O76036 304 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 GAAP10253 952 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 TAL1P17542 331 aaPredicted RBP13□□□□□ -0.33
SHMT2-226ENST00000556825 TBXA2RP21731 343 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 HOXC12P31275 282 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 ARL4AP40617 200 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 OMPP47874 163 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 RABGGTBP53611 331 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 NRG1Q02297 640 aaPredicted RBP13□□□□□ -0.33
SHMT2-226ENST00000556825 ZNHIT3Q15649 155 aaPredicted RBP13□□□□□ -0.33
SHMT2-226ENST00000556825 MPPE1Q53F39 396 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 TMEM35AQ53FP2 167 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 HECTD2Q5U5R9 776 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 OVOS1Q6IE37 1185 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 SLC27A1Q6PCB7 646 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF783Q6ZMS7 281 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 Q6ZSR9 355 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 MON1AQ86VX9 555 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 BOLLQ8N9W6 283 aaKnown RBP13□□□□□ -0.33
SHMT2-226ENST00000556825 DBF4BQ8NFT6 615 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 OR10G2Q8NGC3 310 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 OR1S2Q8NGQ3 325 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 IL31RAQ8NI17 732 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 XAGE5Q8WWM1 108 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 CNTNAP3BQ96NU0 1288 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 FXYD6Q9H0Q3 95 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 SPIN1Q9Y657 262 aaPredicted RBP13□□□□□ -0.33
SHMT2-226ENST00000556825 CARNS1A5YM72 827 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 A8MXE2 369 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 H0YCG3 227 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 RRP8O43159 456 aaKnown RBP13□□□□□ -0.33
SHMT2-226ENST00000556825 DLEU1O43261 78 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 ANKRD34CP0C6C1 535 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 IFNGR1P15260 489 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 MGMTP16455 207 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 CDX1P47902 265 aaPredicted RBP13□□□□□ -0.33
SHMT2-226ENST00000556825 PLA2G7Q13093 441 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 GAMTQ14353 236 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 HNF4GQ14541 408 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 COL13A1Q5TAT6 717 aaPredicted RBP13□□□□□ -0.33
SHMT2-226ENST00000556825 SLC22A10Q63ZE4 541 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 DCAF15Q66K64 600 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 PAQR6Q6TCH4 344 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 TPRA1Q86W33 373 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 CPXM2Q8N436 756 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 MCPH1Q8NEM0 835 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 OR2G2Q8NGZ5 317 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 DCAF4Q8WV16 495 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms