RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 ZNF619Q8N2I2 560 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 C10orf111Q8N326 155 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 SPPL2AQ8TCT8 520 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 LZICQ8WZA0 190 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 MAL2Q969L2 176 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 NAF1Q96HR8 494 aaKnown RBP13.41□□□□□ -0.26
SHMT2-210ENST00000553950 ZNF354BQ96LW1 612 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 SDF2Q99470 211 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 TREX2Q9BQ50 279 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-210ENST00000553950 MESP1Q9BRJ9 268 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 LHPPQ9H008 270 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 ARMC7Q9H6L4 198 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 EVA1AQ9H8M9 152 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 ADPRHL2Q9NX46 363 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 EGFL7Q9UHF1 273 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 YARS2Q9Y2Z4 477 aaKnown RBP13.41□□□□□ -0.26
SHMT2-210ENST00000553950 IFT52Q9Y366 437 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 CACNA1AO00555 2505 aa13.41□□□□□ -0.26
SHMT2-210ENST00000553950 OR6C70A6NIJ9 312 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 H0YHG0 523 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 PGM3O95394 542 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 IL33O95760 270 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 C1QCP02747 245 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 ALPPP05187 535 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 PRKAR1AP10644 381 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 ENDOUP21128 410 aaKnown RBP13.4□□□□□ -0.26
SHMT2-210ENST00000553950 ITGA3P26006 1051 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 EIF2S3P41091 472 aaKnown RBP13.4□□□□□ -0.26
SHMT2-210ENST00000553950 CASRP41180 1078 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 PNLIPRP2P54317 469 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 FUT5Q11128 374 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 NNATQ16517 81 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 SYPL1Q16563 259 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 MEP1AQ16819 746 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 FLYWCH1Q4VC44 716 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 LRRC23Q53EV4 343 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-210ENST00000553950 EIPR1Q53HC9 387 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 CRB2Q5IJ48 1285 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 AP1ARQ63HQ0 302 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 GLYATQ6IB77 296 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 H3F3CQ6NXT2 135 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 CCDC81Q6ZN84 652 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 WDR53Q7Z5U6 358 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-210ENST00000553950 BCORP1Q8N888 145 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 ANKFN1Q8N957 763 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 FAM156AQ8NDB6 213 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 FAM110BQ8TC76 370 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 SLC26A7Q8TE54 656 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 PIK3R3Q92569 461 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 DIO2Q92813 273 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 UTP4Q969X6 686 aaKnown RBP13.4□□□□□ -0.26
SHMT2-210ENST00000553950 OMA1Q96E52 524 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 OTUB1Q96FW1 271 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-210ENST00000553950 SAP130Q9H0E3 1048 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 OLAHQ9NV23 265 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 PACSIN3Q9UKS6 424 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 SSUH2Q9Y2M2 353 aa13.4□□□□□ -0.26
SHMT2-210ENST00000553950 ACOT8O14734 319 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 PPM1BO75688 479 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 DBIP07108 87 aaKnown RBP13.39□□□□□ -0.27
SHMT2-210ENST00000553950 THBS1P07996 1170 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 NGFRP08138 427 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 CHRM4P08173 479 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 ITGAMP11215 1152 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 ABCD3P28288 659 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 KDELR2P33947 212 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 SSR4P51571 173 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 SOX8P57073 446 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 TMPRSS3P57727 454 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 LARS2Q15031 903 aaKnown RBP13.39□□□□□ -0.27
SHMT2-210ENST00000553950 LIN52Q52LA3 116 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 TCTN3Q6NUS6 607 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 FIGNL1Q6PIW4 674 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 FRRS1Q6ZNA5 592 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 RPS19BP1Q86WX3 136 aaKnown RBP13.39□□□□□ -0.27
SHMT2-210ENST00000553950 SPACA3Q8IXA5 215 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 FAM13CQ8NE31 585 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 ASB15Q8WXK1 588 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 TMBIM1Q969X1 311 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 RSRC1Q96IZ7 334 aaKnown RBP13.39□□□□□ -0.27
SHMT2-210ENST00000553950 THOC3Q96J01 351 aaKnown RBP13.39□□□□□ -0.27
SHMT2-210ENST00000553950 PCDHAC1Q9H158 963 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 SLC38A1Q9H2H9 487 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 MTHFD2LQ9H903 347 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-210ENST00000553950 SEC14L3Q9UDX4 400 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 SLC13A4Q9UKG4 626 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 BAG5Q9UL15 447 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 ABCG2Q9UNQ0 655 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 ZNF232Q9UNY5 417 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 NPFFR2Q9Y5X5 522 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 GPC6Q9Y625 555 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-210ENST00000553950 PCSK5Q92824 1860 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 APC2O95996 2303 aa13.39□□□□□ -0.27
SHMT2-210ENST00000553950 GXYLT2A0PJZ3 443 aa13.38□□□□□ -0.27
SHMT2-210ENST00000553950 ARGFXA6NJG6 315 aa13.38□□□□□ -0.27
SHMT2-210ENST00000553950 SCDO00767 359 aa13.38□□□□□ -0.27
SHMT2-210ENST00000553950 TP53I11O14683 189 aa13.38□□□□□ -0.27
SHMT2-210ENST00000553950 EFSO43281 561 aa13.38□□□□□ -0.27
SHMT2-210ENST00000553950 PRKNO60260 465 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-210ENST00000553950 ITGA10O75578 1167 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms