RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 RIT1Q92963 219 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 HRASLS5Q96KN8 279 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 GPA33Q99795 319 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 CNPPD1Q9BV87 410 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 CCDC90BQ9GZT6 254 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 PIGUQ9H490 435 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 SYNDIG1Q9H7V2 258 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 ERVMER34-1Q9H9K5 563 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 PRMT8Q9NR22 394 aaPredicted RBP11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 CUTCQ9NTM9 273 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 ACAD8Q9UKU7 415 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF443Q9Y2A4 671 aaPredicted RBP11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 SLC9A8Q9Y2E8 581 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 LY6G6EA0A0G2JKS1 128 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 ALOX5P09917 674 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 GKN3PP0CG01 181 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 PRG2P13727 222 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 GNSP15586 552 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 HSD11B2P80365 405 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 FAM53BQ14153 422 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 RAB39AQ14964 217 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 RBM48Q5RL73 367 aaKnown RBP11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF773Q6PK81 442 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 CCDC103Q8IW40 242 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 GALNT12Q8IXK2 581 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 POM121Q96HA1 1249 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 PITX2Q99697 317 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 FUZQ9BT04 418 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 FNDC11Q9BVV2 318 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 NAA50Q9GZZ1 169 aaKnown RBP11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 SMOC1Q9H4F8 434 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 SEMA4GQ9NTN9 838 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 ERVK-18Q9QC07 812 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 CDC14AQ9UNH5 594 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 POFUT2Q9Y2G5 429 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 U3KQA8 63 aa11.86□□□□□ -0.51
VIPAS39-206ENST00000553888 HEATR5AQ86XA9 2040 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 A0A087WV62 115 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 DUXAA6NLW8 204 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 A8MUA0 341 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 SIGLEC6O43699 453 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 GSTT1P30711 240 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 NUDT6P53370 316 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 XAF1Q6GPH4 301 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 PGBD2Q6P3X8 592 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 CCBE1Q6UXH8 406 aaPredicted RBP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF574Q6ZN55 896 aaPredicted RBP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 KANSL1Q7Z3B3 1105 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 ARHGAP22Q7Z5H3 698 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 C11orf74Q86VG3 221 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 WDR5BQ86VZ2 330 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 APLFQ8IW19 511 aaPredicted RBP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 SPARTQ8N0X7 666 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF321PQ8N8H1 164 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF675Q8TD23 568 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 GAB3Q8WWW8 586 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 SPATA5L1Q9BVQ7 753 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 RAB33BQ9H082 229 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF556Q9HAH1 456 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 C11orf16Q9NQ32 467 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 PRDM9Q9NQV7 894 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 SH3PXD2BA1X283 911 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 TMX2-CTNND1H3BSU7 103 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF749O43361 778 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 CTNSO60931 367 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 IGKV1D-16P01601 117 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 THY1P04216 161 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 CHMP24386 653 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 PCSK6P29122 969 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 EMDP50402 254 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 PSG6Q00889 435 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 SIGLEC14Q08ET2 396 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 TARDBPQ13148 414 aaKnown RBP eCLIP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 IL18R1Q13478 541 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 PTGES3Q15185 160 aaKnown RBP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 EXOSC6Q5RKV6 272 aaKnown RBP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 PLXDC1Q8IUK5 500 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 LILRB2Q8N423 598 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 OR6C4Q8NGE1 309 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 TSLPQ969D9 159 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 DGCR14Q96DF8 476 aaKnown RBP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 RBM18Q96H35 190 aaKnown RBP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 TSC22D3Q99576 134 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 ARHGDIGQ99819 225 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 APOL4Q9BPW4 351 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 EPB41L1Q9H4G0 881 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 TUBA8Q9NY65 449 aaPredicted RBP11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 ERVK-19Q9WJR5 959 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 CSNK1G3Q9Y6M4 447 aa11.85□□□□□ -0.51
VIPAS39-206ENST00000553888 FITM1A5D6W6 292 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 IFNA16P05015 189 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 GGT2P36268 569 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 MAP2K4P45985 399 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 TAS2R41P59536 307 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 GRM7Q14831 915 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 CLVS1Q8IUQ0 354 aaPredicted RBP11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 CDRT4Q8N9R6 151 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 SETD9Q8NE22 299 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 SAP25Q8TEE9 199 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms