RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PLA1AQ53H76 456 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF805Q5CZA5 627 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 LY6G5CQ5SRR4 150 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 PIP5KL1Q5T9C9 394 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF57Q68EA5 555 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 RAET1GQ6H3X3 334 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SLC27A4Q6P1M0 643 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 MZT2AQ6P582 158 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ASB18Q6ZVZ8 466 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 KLBQ86Z14 1044 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 NKAIN4Q8IVV8 208 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 POGLUT1Q8NBL1 392 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 OR11H4Q8NGC9 324 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 DNAJA4Q8WW22 397 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 VWCEQ96DN2 955 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SLC35G5Q96KT7 338 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 COQ10AQ96MF6 247 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 AMDHD1Q96NU7 426 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 PRAP1Q96NZ9 151 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 MACROD1Q9BQ69 325 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 OR52A5Q9H2C5 316 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 RHBGQ9H310 441 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 EPHX3Q9H6B9 360 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SLC28A3Q9HAS3 691 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 TM7SF3Q9NS93 570 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ZCCHC3Q9NUD5 404 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SAGE1Q9NXZ1 904 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SLCO1C1Q9NYB5 712 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 TAS2R7Q9NYW3 318 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SLC23A2Q9UGH3 650 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 IL36AQ9UHA7 158 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 PHF11Q9UIL8 331 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SCN2AQ99250 2005 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SCN3AQ9NY46 2000 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 GSAPA4D1B5 854 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 FAM183AA6NL82 134 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CPSF4LA6NMK7 179 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 PIP5K1CO60331 668 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 TSC22D2O75157 780 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ZIC2O95409 532 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 HLA-DPB1P04440 258 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 XPAP23025 273 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SLC6A1P30531 599 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 THBS2P35442 1172 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 NUDT1P36639 197 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 NNMTP40261 264 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SRP9P49458 86 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 OR10A3P58181 314 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 LASP1Q14847 261 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 BCL2L15Q5TBC7 163 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 LCTLQ6UWM7 567 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF793Q6ZN11 406 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 VRK2Q86Y07 508 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 FAM20CQ8IXL6 584 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SIX5Q8N196 739 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SIRT6Q8N6T7 355 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 C7orf57Q8NEG2 295 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 OR11H7Q8NGC8 314 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 TEX47Q8TBZ9 253 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 PCNPQ8WW12 178 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 IRF7Q92985 503 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CREB3L1Q96BA8 519 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CHFRQ96EP1 664 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ART5Q96L15 291 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 HYLS1Q96M11 299 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 DPH7Q9BTV6 452 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 KLHL31Q9H511 634 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 NARFLQ9H6Q4 476 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 DDX31Q9H8H2 851 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ZFP64Q9NPA5 681 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 PAK6Q9NQU5 681 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 EXTL2Q9UBQ6 330 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ASF1AQ9Y294 204 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ASB4Q9Y574 426 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CSNK1G3Q9Y6M4 447 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 TRAV6A0A075B6T7 132 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 A0A1W2PPV9 198 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 KPNA3O00505 521 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-212ENST00000552491 CDC42EP2O14613 210 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 PGRMC2O15173 223 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 SURF4O15260 269 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 SLC19A2O60779 497 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 PQBP1O60828 265 aaKnown RBP5.07□□□□□ -1.6
LIMA1-212ENST00000552491 LILRB3O75022 631 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 NOS1APO75052 506 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-212ENST00000552491 IGHA1P01876 353 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 HMGN2P05204 90 aaKnown RBP5.07□□□□□ -1.6
LIMA1-212ENST00000552491 HK1P19367 917 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 CXCL3P19876 107 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 M6PRP20645 277 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 SHC1P29353 583 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 IFNA8P32881 189 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 GPR4P46093 362 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 TM4SF4P48230 202 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 INPP1P49441 399 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 STXBP1P61764 594 aaKnown RBP5.07□□□□□ -1.6
LIMA1-212ENST00000552491 ACSM1Q08AH1 577 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 TSPAN31Q12999 210 aa5.07□□□□□ -1.6
LIMA1-212ENST00000552491 MRPL28Q13084 256 aaKnown RBP5.07□□□□□ -1.6
LIMA1-212ENST00000552491 ESCO2Q56NI9 601 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms