RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ANKRD54Q6NXT1 300 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 PRR22Q8IZ63 422 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 MINDY2Q8NBR6 621 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 OR9A4Q8NGU2 314 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 WDR20Q8TBZ3 569 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 SGCDQ92629 289 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 AMBRA1Q9C0C7 1298 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 FTSJ1Q9UET6 329 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 SLC23A2Q9UGH3 650 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 ATG4BQ9Y4P1 393 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 C12orf71A8MTZ7 269 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 DRD1P21728 446 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 VWA5B2Q8N398 1253 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 SERINC2Q96SA4 455 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 PHOX2BQ99453 314 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 B3GNT4Q9C0J1 378 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 ZNF385DQ9H6B1 395 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 OR51B4Q9Y5P0 310 aa15.33■□□□□ 0.04
CUX1-213ENST00000549414 TRAV6A0A075B6T7 132 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 ZNF670-ZNF695F2Z2N8 137 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 GYPBP06028 91 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 NSDHLQ15738 373 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 DUSP7Q16829 419 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 INAVAQ3KP66 663 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 FAM111BQ6SJ93 734 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 RTL10Q7L3V2 364 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 OR2L3Q8NG85 312 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 NSMAFQ92636 917 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 TM4SF18Q96CE8 201 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 PDXPQ96GD0 296 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 NDUFAF4Q9P032 175 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 TRAPPC6AO75865 159 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 KLHL18O94889 574 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 PPP1R3DO95685 299 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 CDK1P06493 297 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 KIR2DS3Q14952 304 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 ZNF385BQ569K4 471 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 BCDIN3DQ7Z5W3 292 aaKnown RBP15.32■□□□□ 0.04
CUX1-213ENST00000549414 KRT77Q7Z794 578 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 CDCA3Q99618 268 aaPredicted RBP15.32■□□□□ 0.04
CUX1-213ENST00000549414 G6PC3Q9BUM1 346 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 GLIPR2Q9H4G4 154 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 EGLN3Q9H6Z9 239 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 NEK6Q9HC98 313 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 LAMP5Q9UJQ1 280 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 STUB1Q9UNE7 303 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 CACNA1EQ15878 2313 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 HOXC11O43248 304 aaPredicted RBP15.32■□□□□ 0.04
CUX1-213ENST00000549414 ADORA3P0DMS8 318 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 CSNK1G2P78368 415 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 JAGN1Q8N5M9 183 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 SGTBQ96EQ0 304 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 MSLNLQ96KJ4 702 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 GINS4Q9BRT9 223 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 SAP130Q9H0E3 1048 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 SLC6A13Q9NSD5 602 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 MED16Q9Y2X0 877 aa15.32■□□□□ 0.04
CUX1-213ENST00000549414 PEX12O00623 359 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 PLGP00747 810 aaPredicted RBP15.31■□□□□ 0.04
CUX1-213ENST00000549414 HNRNPKP61978 463 aaKnown RBP eCLIP15.31■□□□□ 0.041e-6■■■■□ 24.1
CUX1-213ENST00000549414 PLCXD2Q0VAA5 305 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ADAM15Q13444 863 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 GAS6Q14393 721 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ZNF627Q7L945 461 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 RBM45Q8IUH3 476 aaKnown RBP15.31■□□□□ 0.04
CUX1-213ENST00000549414 CDRT4Q8N9R6 151 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 HMGCLL1Q8TB92 370 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 METTL7AQ9H8H3 244 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 NANSQ9NR45 359 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 UCKL1Q9NWZ5 548 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 SOBPA7XYQ1 873 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ZNF879B4DU55 563 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 H0YGG7 62 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 FLRT2O43155 660 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 CD160O95971 181 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 AHRP35869 848 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 PPP5CP53041 499 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ARF3P61204 181 aaPredicted RBP15.31■□□□□ 0.04
CUX1-213ENST00000549414 NFATC4Q14934 902 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 SYCE2Q6PIF2 218 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 GALNTL5Q7Z4T8 443 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 UBE2Q1Q7Z7E8 422 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 HLA-CQ95604 372 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ATXN7L1Q9ULK2 861 aaPredicted RBP15.31■□□□□ 0.04
CUX1-213ENST00000549414 SATB2Q9UPW6 733 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 POM121BA6NF01 834 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 PDCD5O14737 125 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 CXCL12P48061 93 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ADARB1P78563 741 aaKnown RBP15.31■□□□□ 0.04
CUX1-213ENST00000549414 FAM71E1Q6IPT2 247 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ADAMTS19Q8TE59 1207 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 PRRC1Q96M27 445 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 PINK1Q9BXM7 581 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 PBX4Q9BYU1 374 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ABI3Q9P2A4 366 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ERVK-19Q9WJR5 959 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 GXYLT2A0PJZ3 443 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 SMAD9O15198 467 aaKnown RBP15.31■□□□□ 0.04
CUX1-213ENST00000549414 HTR1AP08908 422 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms