RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 TMEM52Q8NDY8 209 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 TMEM163Q8TC26 289 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 TRMT61AQ96FX7 289 aaKnown RBP17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 MSLNLQ96KJ4 702 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 MCHR1Q99705 422 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 CNPPD1Q9BV87 410 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 ANKRD19PQ9H560 264 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 ABCB10Q9NRK6 738 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 PTGFRNQ9P2B2 879 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 CPNE7Q9UBL6 633 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 AP3D1O14617 1153 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 UBXN7O94888 489 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 SEMA4FO95754 770 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 RAB36O95755 333 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 CELA2BP08218 269 aaPredicted RBP17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 PORP16435 677 aaPredicted RBP17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 S100A5P33763 92 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 ZNF542PQ5EBM4 170 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 EOGTQ5NDL2 527 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 CLEC12AQ5QGZ9 265 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 FHL5Q5TD97 284 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 PLEKHM3Q6ZWE6 761 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 GDF7Q7Z4P5 450 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 SLC22A16Q86VW1 577 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 HMGB4Q8WW32 186 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 SDF2Q99470 211 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 RACGAP1Q9H0H5 632 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 EXOSC4Q9NPD3 245 aaKnown RBP17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 CARD8Q9Y2G2 431 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 HS3ST3A1Q9Y663 406 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 MYL12BO14950 172 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 APOL3O95236 402 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 AGR2O95994 175 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 SOX6P35712 828 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 RGS19P49795 217 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 PRKCDQ05655 676 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 DECR1Q16698 335 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 RRM2BQ7LG56 351 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 LYSMD2Q8IV50 215 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 PARP16Q8N5Y8 322 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 OR5T3Q8NGG3 340 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 BAHD1Q8TBE0 780 aaPredicted RBP17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 PIGXQ8TBF5 258 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 GPBAR1Q8TDU6 330 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 ACOT11Q8WXI4 607 aaPredicted RBP17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 RERGQ96A58 199 aaPredicted RBP17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 SLC41A3Q96GZ6 507 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 NDUFB11Q9NX14 153 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 CFL2Q9Y281 166 aa17.29■□□□□ 0.36
PRPF40B-208ENST00000548436 C2orf74A8MZ97 194 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 TBX1O43435 398 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 FGF17O60258 216 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 PIP5K1CO60331 668 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 TNFP01375 233 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 IGHV4-34P06331 123 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 PPP1CAP62136 330 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 UBE2IP63279 158 aaKnown RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 MLLT11Q13015 90 aaPredicted RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 FLYWCH1Q4VC44 716 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 LIPKQ5VXJ0 399 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 PEX5LQ8IYB4 626 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 FAM83FQ8NEG4 500 aaPredicted RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 FLCNQ8NFG4 579 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 TMEM255BQ8WV15 326 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 ASPNQ9BXN1 380 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 C8orf33Q9H7E9 229 aaPredicted RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 TRIM45Q9H8W5 580 aaPredicted RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 IL21RQ9HBE5 538 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 LYRM4Q9HD34 91 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 ADAP2Q9NPF8 381 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 TRPV5Q9NQA5 729 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 HRASLS2Q9NWW9 162 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 C19orf53Q9UNZ5 99 aaPredicted RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 C10orf142B7Z368 130 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 PRODHO43272 600 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 GNSP15586 552 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 ZNF10P21506 573 aaPredicted RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 IFNA8P32881 189 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 RPS19P39019 145 aaKnown RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 GPR4P46093 362 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 EEF1A1P68104 462 aaKnown RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 ZNF45Q02386 682 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 GPR68Q15743 365 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 MAPK14Q16539 360 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 SLC36A4Q6YBV0 504 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 ABI3BPQ7Z7G0 1075 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 ZNF761Q86XN6 746 aaPredicted RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 PHC2Q8IXK0 858 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 NRMQ8IXM6 262 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 SLC37A2Q8TED4 501 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 ZFPM2Q8WW38 1151 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 RNFT2Q96EX2 444 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 KCNS3Q9BQ31 491 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 PRDM9Q9NQV7 894 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 POT1Q9NUX5 634 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 MRPS18AQ9NVS2 196 aaKnown RBP17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 SEC14L4Q9UDX3 406 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 MMP17Q9ULZ9 603 aa17.28■□□□□ 0.36
PRPF40B-208ENST00000548436 ZNF232Q9UNY5 417 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms