RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 TEX19Q8NA77 164 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 FAM98AQ8NCA5 519 aaKnown RBP11.21□□□□□ -0.61
DDX55-210ENST00000543016 SPPL2AQ8TCT8 520 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 XAGE5Q8WWM1 108 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 DTNBP1Q96EV8 351 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 RMND5BQ96G75 393 aaPredicted RBP11.21□□□□□ -0.61
DDX55-210ENST00000543016 SCMH1Q96GD3 660 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 TRNT1Q96Q11 434 aaKnown RBP11.21□□□□□ -0.61
DDX55-210ENST00000543016 YIPF4Q9BSR8 244 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 SPATA9Q9BWV2 254 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 SH2D2AQ9NP31 389 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 ZNF71Q9NQZ8 489 aaPredicted RBP11.21□□□□□ -0.61
DDX55-210ENST00000543016 SLC6A13Q9NSD5 602 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 SACM1LQ9NTJ5 587 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 SLAMF8Q9P0V8 285 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 ABCG2Q9UNQ0 655 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 CPAMD8Q8IZJ3 1885 aa11.21□□□□□ -0.62
DDX55-210ENST00000543016 HMGN4O00479 90 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 AIM2O14862 343 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 NME2P1O60361 137 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 STX11O75558 287 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 OR12D1P0DN82 309 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 NME2P22392 152 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 CRATP43155 626 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 MVDP53602 400 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 DSTNP60981 165 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 RPS26P62854 115 aaKnown RBP11.2□□□□□ -0.62
DDX55-210ENST00000543016 HPCAP84074 193 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 RBBP4Q09028 425 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 GTDC1Q4AE62 458 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 ZNF766Q5HY98 468 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 DCST2Q5T1A1 773 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.2□□□□□ -0.62
DDX55-210ENST00000543016 SPINK14Q6IE38 97 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 NANOGP8Q6NSW7 305 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 SLC30A6Q6NXT4 461 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 TNFAIP8L2Q6P589 184 aaPredicted RBP11.2□□□□□ -0.62
DDX55-210ENST00000543016 PCSK4Q6UW60 755 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 WDR53Q7Z5U6 358 aaPredicted RBP11.2□□□□□ -0.62
DDX55-210ENST00000543016 SERPINA11Q86U17 422 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 FBXW8Q8N3Y1 598 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 POU5F2Q8N7G0 328 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 POGLUT1Q8NBL1 392 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 PSD4Q8NDX1 1056 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 FAM13CQ8NE31 585 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 OR4N2Q8NGD1 307 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 PIK3R3Q92569 461 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 CDS1Q92903 461 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 HGDQ93099 445 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 RCN3Q96D15 328 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 NSL1Q96IY1 281 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 ADOQ96SZ5 270 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 SDF2Q99470 211 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 CPPED1Q9BRF8 314 aaPredicted RBP11.2□□□□□ -0.62
DDX55-210ENST00000543016 THUMPD3Q9BV44 507 aaKnown RBP11.2□□□□□ -0.62
DDX55-210ENST00000543016 SERHL2Q9H4I8 314 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 TMEM38AQ9H6F2 299 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 NANOGQ9H9S0 305 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 SDHAF3Q9NRP4 125 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 UBQLN4Q9NRR5 601 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 P2RX2Q9UBL9 471 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 ANAPC2Q9UJX6 822 aa11.2□□□□□ -0.62
DDX55-210ENST00000543016 CHCHD2Q9Y6H1 151 aaPredicted RBP11.2□□□□□ -0.62
DDX55-210ENST00000543016 TLN1Q9Y490 2541 aaKnown RBP11.2□□□□□ -0.62
DDX55-210ENST00000543016 LAMA5O15230 3695 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 GXYLT2A0PJZ3 443 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 K7EM74 188 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 FXYD1O00168 92 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 DNAJA2O60884 412 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 UGT2B11O75310 529 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 NME6O75414 186 aaPredicted RBP11.19□□□□□ -0.62
DDX55-210ENST00000543016 TNFRSF21O75509 655 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 ESRRAP11474 423 aaPredicted RBP11.19□□□□□ -0.62
DDX55-210ENST00000543016 CNR1P21554 472 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 CALB2P22676 271 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 FBXW4P57775 412 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 ZNF630Q2M218 657 aaPredicted RBP11.19□□□□□ -0.62
DDX55-210ENST00000543016 GCNT6Q5T4J0 391 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 LRRC74BQ6ZQY2 392 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 ZNF227Q86WZ6 799 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 SLC30A8Q8IWU4 369 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 PRR22Q8IZ63 422 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 ZNF527Q8NB42 609 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 CATSPER1Q8NEC5 780 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 OR10G3Q8NGC4 313 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 OR5D16Q8NGK9 328 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 FBXO30Q8TB52 745 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 PNPT1Q8TCS8 783 aaKnown RBP11.19□□□□□ -0.62
DDX55-210ENST00000543016 RNF138Q8WVD3 245 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 AURKBQ96GD4 344 aaPredicted RBP11.19□□□□□ -0.62
DDX55-210ENST00000543016 SIGLEC12Q96PQ1 595 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 GPATCH1Q9BRR8 931 aaKnown RBP11.19□□□□□ -0.62
DDX55-210ENST00000543016 ANGPTL4Q9BY76 406 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 ZNF350Q9GZX5 532 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 SAP130Q9H0E3 1048 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 KAT8Q9H7Z6 458 aaKnown RBP11.19□□□□□ -0.62
DDX55-210ENST00000543016 IL1RL2Q9HB29 575 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 A4GALTQ9NPC4 353 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 ANKRD10Q9NXR5 420 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 CNOT11Q9UKZ1 510 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms