RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ACAP2Q15057 778 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 TAB1Q15750 504 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 AP5B1Q2VPB7 878 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 CYP27C1Q4G0S4 372 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 RAET1LQ5VY80 246 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF470Q6ECI4 717 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 ADNP2Q6IQ32 1131 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 NEPROQ6NW34 567 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 PGM2L1Q6PCE3 622 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SHQ1Q6PI26 577 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SLC22A25Q6T423 547 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SEZ6L2Q6UXD5 910 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 TMIGD1Q6UXZ0 262 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 DTX2Q86UW9 622 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 PLCZ1Q86YW0 608 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 MUC15Q8N387 334 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SVOPLQ8N434 492 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 GPATCH11Q8N954 259 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 ACOT4Q8N9L9 421 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 WDSUB1Q8N9V3 476 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 STEAP2Q8NFT2 490 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 OR6K3Q8NGY3 331 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 OR56A3Q8NH54 315 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 CD200R1Q8TD46 325 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 FAM216AQ8WUB2 273 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 HSD17B8Q92506 261 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 PEX13Q92968 403 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 MRPL24Q96A35 216 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 LINGO1Q96FE5 620 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 FAM46AQ96IP4 442 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 NDNQ99608 321 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 CHP1Q99653 195 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 VRK1Q99986 396 aaPredicted RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF747Q9BV97 191 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 NAT10Q9H0A0 1025 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 STMN4Q9H169 189 aaPredicted RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 RPF2Q9H7B2 306 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 NHEJ1Q9H9Q4 299 aaPredicted RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 PRDM7Q9NQW5 492 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 CBLN4Q9NTU7 201 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 INTS10Q9NVR2 710 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SYBUQ9NX95 663 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 MKS1Q9NXB0 559 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SLC17A6Q9P2U8 582 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 MED16Q9Y2X0 877 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF337Q9Y3M9 751 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SPEF1Q9Y4P9 236 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SNX8Q9Y5X2 465 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 EPN1Q9Y6I3 576 aaPredicted RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 KCNE2Q9Y6J6 123 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 MGAM2Q2M2H8 2515 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 NPIPA5A0A0B4J1W7 369 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 TCRBV7S2A1N4TA0A589 114 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 PRAMEF25A6NGN4 478 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 C17orf51A8MQB3 221 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 VSTM5A8MXK1 200 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 SHISA9B4DS77 424 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 E7EQL1 145 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 NPIPA7E9PJI5 369 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 H3BS24 57 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 ZIC3O60481 467 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 CDH16O75309 829 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 REM1O75628 298 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF189O75820 626 aaPredicted RBP4.23□□□□□ -1.73
LIMS1-214ENST00000542845 CLDN9O95484 217 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 IL33O95760 270 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 ADAP00813 363 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 TGFB1P01137 390 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 CLPSP04118 112 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 GYPCP04921 128 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 CSF3P09919 207 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 ZSCAN5DPP0CG00 497 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 NPIPA8P0DM63 369 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 PF4V1P10720 104 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 COL6A2P12110 1019 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF23P17027 643 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 OGNP20774 298 aaKnown RBP4.23□□□□□ -1.73
LIMS1-214ENST00000542845 ATP5A1P25705 553 aaKnown RBP4.23□□□□□ -1.73
LIMS1-214ENST00000542845 APEX1P27695 318 aaKnown RBP4.23□□□□□ -1.73
LIMS1-214ENST00000542845 ABCD3P28288 659 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 TLX1P31314 330 aaPredicted RBP4.23□□□□□ -1.73
LIMS1-214ENST00000542845 IL2RGP31785 369 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 HPDP32754 393 aaPredicted RBP4.23□□□□□ -1.73
LIMS1-214ENST00000542845 DEKP35659 375 aaKnown RBP4.23□□□□□ -1.73
LIMS1-214ENST00000542845 PTGDSP41222 190 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 GDF5P43026 501 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 SSR2P43308 183 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 MAGEA1P43355 309 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 SLC6A8P48029 635 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 KCNC1P48547 511 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 CLDN20P56880 219 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 RWDD2BP57060 319 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 UBASH3AP57075 661 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 SESN3P58005 492 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 RPL11P62913 178 aaKnown RBP4.23□□□□□ -1.73
LIMS1-214ENST00000542845 BASP1P80723 227 aaKnown RBP4.23□□□□□ -1.73
LIMS1-214ENST00000542845 CHRNB3Q05901 458 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 PLCXD2Q0VAA5 305 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 SLAMF1Q13291 335 aa4.23□□□□□ -1.73
LIMS1-214ENST00000542845 SNX1Q13596 522 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms