RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ENY2Q9NPA8 101 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 ZNF850A8MQ14 1090 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 NIPSNAP2O75323 286 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 RAD51DO75771 328 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 ZNF280AP59817 542 aaPredicted RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 FAM98CQ17RN3 349 aaKnown RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 TECRLQ5HYJ1 363 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 PM20D1Q6GTS8 502 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 VGLL2Q8N8G2 317 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 TSTD1Q8NFU3 115 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 SPRYD4Q8WW59 207 aaPredicted RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 PDE7BQ9NP56 450 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 LYRM2Q9NU23 88 aaPredicted RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 KLHL42Q9P2K6 505 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 EPHA6Q9UF33 1036 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 CPA4Q9UI42 421 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 GPR52Q9Y2T5 361 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 PCDHGA2Q9Y5H1 932 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 MN1Q10571 1320 aaPredicted RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 SYN3O14994 580 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 KIAA0355O15063 1070 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 ANKRD28O15084 1053 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 KLF8O95600 359 aaPredicted RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 QDPRP09417 244 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 S1PR1P21453 382 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 CD80P33681 288 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 PSPHP78330 225 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 CAPSQ13938 189 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 CBX2Q14781 532 aaPredicted RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 NUP54Q7Z3B4 507 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 ANKK1Q8NFD2 765 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 OR1E3Q8WZA6 343 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 TIFAQ96CG3 184 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 FCRL5Q96RD9 977 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 LMF1Q96S06 567 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 ACO2Q99798 780 aaKnown RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 SYT3Q9BQG1 590 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 NMNAT2Q9BZQ4 307 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 B3GALT1Q9Y5Z6 326 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 CLDN5O00501 218 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 BET1O15155 118 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 MT-ND4LP03901 98 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 HSD17B2P37059 387 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 GABRA2P47869 451 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 RPP30P78346 268 aaKnown RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 HSF1Q00613 529 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 UBE2NLQ5JXB2 153 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 C5orf46Q6UWT4 87 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 OR9Q2Q8NGE9 314 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 OR6N2Q8NGY6 317 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 RPL10LQ96L21 214 aaKnown RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 SENP8Q96LD8 212 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 CMTM3Q96MX0 182 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 DPH2Q9BQC3 489 aaPredicted RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 ALG8Q9BVK2 526 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 STYXL1Q9Y6J8 313 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 TMEM82A0PJX8 343 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 HAS3O00219 553 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 LAP3P28838 519 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 TCEAL1Q15170 157 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 PARP15Q460N3 678 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 UNC50Q53HI1 259 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 OTOP2Q7RTS6 562 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 GLB1L2Q8IW92 636 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 OR52P1PQ8NH57 321 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 CERKQ8TCT0 537 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 DYRK2Q92630 601 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 PRMT6Q96LA8 375 aaPredicted RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 HIST1H2AAQ96QV6 131 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 CCNL2Q96S94 520 aaPredicted RBP8.32□□□□□ -1.08
YBX3-208ENST00000540447 SORT1Q99523 831 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 VAMP8Q9BV40 100 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 PTDSS2Q9BVG9 487 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 SLC2A6Q9UGQ3 507 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 IL17BQ9UHF5 180 aa8.32□□□□□ -1.08
YBX3-208ENST00000540447 CST2P09228 141 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 TAS2R19P59542 299 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 CNTN2Q02246 1040 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 ZDHHC20Q5W0Z9 365 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 LAS2Q8IYD9 372 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 LINC00518Q8N0U6 118 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 TFAP2BQ92481 460 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 KCTD12Q96CX2 325 aaKnown RBP8.31□□□□□ -1.08
YBX3-208ENST00000540447 CYP2S1Q96SQ9 504 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 ZNF382Q96SR6 550 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 PTPN18Q99952 460 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 CMSS1Q9BQ75 279 aaKnown RBP8.31□□□□□ -1.08
YBX3-208ENST00000540447 PCDHA2Q9Y5H9 948 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 ABCA9Q8IUA7 1624 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 PIGBOS1A0A0B4J2F0 54 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 UNC119BA6NIH7 251 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 LRG1P02750 347 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 SLC2A1P11166 492 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 FPR3P25089 353 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 IVDP26440 423 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 NCBP2-AS2Q69YL0 99 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 SLC8B1Q6J4K2 584 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 UQCC3Q6UW78 93 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 ZNF610Q8N9Z0 462 aa8.31□□□□□ -1.08
YBX3-208ENST00000540447 C2CD4AQ8NCU7 369 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms