RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZNF845Q96IR2 970 aaPredicted RBP12.23□□□□□ -0.45
SS18-204ENST00000539244 HS3ST6Q96QI5 342 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 MDFIQ99750 246 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 UBTD1Q9HAC8 227 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 PFDN4Q9NQP4 134 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 SLC35C2Q9NQQ7 365 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 TAS2R9Q9NYW1 312 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 PYCARDQ9ULZ3 195 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 ABCG2Q9UNQ0 655 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 A0A087WV62 115 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 ESYT3A0FGR9 886 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 C17orf51A8MQB3 221 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 KIAA1324LA8MWY0 1029 aaPredicted RBP12.22□□□□□ -0.45
SS18-204ENST00000539244 MANBAO00462 879 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 PCDH7O60245 1069 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 FADS1O60427 444 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 OR4F21O95013 312 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 ESRRBO95718 433 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 KRT6AP02538 564 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 KRT6BP04259 564 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 INHBAP08476 426 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 TSPAN8P19075 237 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 HK1P19367 917 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 TCEA1P23193 301 aaKnown RBP12.22□□□□□ -0.45
SS18-204ENST00000539244 HSD17B3P37058 310 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 GSTM5P46439 218 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 KRT6CP48668 564 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 SUCLG1P53597 346 aaKnown RBP12.22□□□□□ -0.45
SS18-204ENST00000539244 CLCQ05315 142 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 RASA2Q15283 850 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 CYP27C1Q4G0S4 372 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 TCHHL1Q5QJ38 904 aaPredicted RBP12.22□□□□□ -0.45
SS18-204ENST00000539244 RAET1LQ5VY80 246 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 FAM219BQ5XKK7 198 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 GALNT18Q6P9A2 607 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 C22orf34Q6ZV56 151 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 SLC44A2Q8IWA5 706 aaPredicted RBP12.22□□□□□ -0.45
SS18-204ENST00000539244 UBQLNLQ8IYU4 475 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 FAM9CQ8IZT9 166 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 METTL25Q8N6Q8 603 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 FNDC9Q8TBE3 224 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 EXOSC8Q96B26 276 aaKnown RBP12.22□□□□□ -0.45
SS18-204ENST00000539244 MTBPQ96DY7 904 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 PERPQ96FX8 193 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 PINK1Q9BXM7 581 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 DSN1Q9H410 356 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 GIMAP4Q9NUV9 329 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 ZNF337Q9Y3M9 751 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 FBN3Q75N90 2809 aa12.22□□□□□ -0.45
SS18-204ENST00000539244 TRIM64A6NGJ6 449 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 TRIM64BA6NI03 449 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 H0YC42 278 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 SCO2O43819 266 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 TMCC2O75069 709 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 COQ9O75208 318 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 SLITRK5O94991 958 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 CHN1P15882 459 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 PCSK6P29122 969 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 TIA1P31483 386 aaKnown RBP eCLIP12.21□□□□□ -0.45
SS18-204ENST00000539244 MPIP34949 423 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 TPD52P55327 224 aaPredicted RBP12.21□□□□□ -0.45
SS18-204ENST00000539244 SIRPAP78324 504 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 PON3Q15166 354 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 GLYR1Q49A26 553 aaPredicted RBP12.21□□□□□ -0.45
SS18-204ENST00000539244 SPIN4Q56A73 249 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 FAM214BQ7L5A3 538 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 ZNF550Q7Z398 422 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 CDYL2Q8N8U2 506 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 ZNF610Q8N9Z0 462 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 UHMK1Q8TAS1 419 aaKnown RBP12.21□□□□□ -0.45
SS18-204ENST00000539244 C16orf78Q8WTQ4 265 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 ZNF382Q96SR6 550 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 PAFAH2Q99487 392 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 PIGQQ9BRB3 760 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 ACPTQ9BZG2 426 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 PTGES2Q9H7Z7 377 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 SDHAF3Q9NRP4 125 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 FAM120CQ9NX05 1096 aaKnown RBP12.21□□□□□ -0.45
SS18-204ENST00000539244 SIRT5Q9NXA8 310 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 MED11Q9P086 117 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 ZNF180Q9UJW8 692 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 NFU1Q9UMS0 254 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 OR10H1Q9Y4A9 318 aa12.21□□□□□ -0.45
SS18-204ENST00000539244 USF3Q68DE3 2245 aa12.21□□□□□ -0.46
SS18-204ENST00000539244 ANK3Q12955 4377 aaKnown RBP12.2□□□□□ -0.46
SS18-204ENST00000539244 IGLV3-32A0A0A0MS00 114 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 GNG14A0A1W2PPG7 69 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 OR2M5A3KFT3 312 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 MYO1GB0I1T2 1018 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 SMAD7O15105 426 aaKnown RBP12.2□□□□□ -0.46
SS18-204ENST00000539244 ULK1O75385 1050 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 PSMG1O95456 288 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 CNOT4O95628 575 aaKnown RBP12.2□□□□□ -0.46
SS18-204ENST00000539244 FCGR2AP12318 317 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 PPP3CBP16298 524 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 TBXA2RP21731 343 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 KCNJ5P48544 419 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 PTH2RP49190 550 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 CLDN20P56880 219 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 RPS3AP61247 264 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms