RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ATP6V1C1P21283 382 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 PRKAR1BP31321 381 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 PIGAP37287 484 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 DCAF7P61962 342 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 HLA-DQA1Q5Y7H0 255 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 AP1ARQ63HQ0 302 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 DHRS4L2Q6PKH6 230 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 ASCL5Q7RTU5 278 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 TSEN54Q7Z6J9 526 aaKnown RBP19.48■□□□□ 0.71
VPS28-208ENST00000527797 CARM1Q86X55 608 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 VRK2Q86Y07 508 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 EPHX4Q8IUS5 362 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 SVOPLQ8N434 492 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 PACRGLQ8N7B6 248 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 ZNF300Q96RE9 604 aaPredicted RBP19.48■□□□□ 0.71
VPS28-208ENST00000527797 G6PC3Q9BUM1 346 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 AMBRA1Q9C0C7 1298 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 C8orf4Q9NR00 106 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 SLC13A4Q9UKG4 626 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 SLC9A8Q9Y2E8 581 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 C15orf41Q9Y2V0 281 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 PTRH2Q9Y3E5 179 aaKnown RBP19.48■□□□□ 0.71
VPS28-208ENST00000527797 ENPP4Q9Y6X5 453 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 SEC16AO15027 2179 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 MYO15AQ9UKN7 3530 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 C2orf92A0A1B0GVN3 265 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 AGAP5A6NIR3 686 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 PDLIM1O00151 329 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 SYT5O00445 386 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 ACOX3O15254 700 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 KIAA0513O60268 411 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 LGI1O95970 557 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 DRD5P21918 477 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 RFX3P48380 749 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 AQP4P55087 323 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 LARS2Q15031 903 aaKnown RBP19.47■□□□□ 0.71
VPS28-208ENST00000527797 NNATQ16517 81 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 PPP4R4Q6NUP7 873 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 SLC29A4Q7RTT9 530 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 ZDHHC13Q8IUH4 622 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 CACTIN-AS1Q8N1I8 211 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 CBR4Q8N4T8 237 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 OR5K1Q8NHB7 308 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 SDCCAG3Q96C92 435 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 LPAR4Q99677 370 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 SLC29A1Q99808 456 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 SPRY4Q9C004 299 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 FRG2CA6NGY1 282 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 G3V2T6 193 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 SOCS2O14508 198 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 DBIP07108 87 aaKnown RBP19.47■□□□□ 0.71
VPS28-208ENST00000527797 THBS1P07996 1170 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 IL7RP16871 459 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 GPR143P51810 404 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 TARDBPQ13148 414 aaKnown RBP eCLIP19.47■□□□□ 0.71
VPS28-208ENST00000527797 PAPD4Q6PIY7 484 aaKnown RBP19.47■□□□□ 0.71
VPS28-208ENST00000527797 NFAM1Q8NET5 270 aaPredicted RBP19.47■□□□□ 0.71
VPS28-208ENST00000527797 B3GNT7Q8NFL0 401 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 OR2Y1Q8NGV0 311 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 VANGL1Q8TAA9 524 aaPredicted RBP19.47■□□□□ 0.71
VPS28-208ENST00000527797 ADIPOR1Q96A54 375 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 LCORQ96JN0 433 aaPredicted RBP19.47■□□□□ 0.71
VPS28-208ENST00000527797 REEP1Q9H902 201 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 ZNF443Q9Y2A4 671 aaPredicted RBP19.47■□□□□ 0.71
VPS28-208ENST00000527797 AK5Q9Y6K8 562 aa19.47■□□□□ 0.71
VPS28-208ENST00000527797 H0YJX3 145 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 ADAMDEC1O15204 470 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 KLF7O75840 302 aaPredicted RBP19.46■□□□□ 0.71
VPS28-208ENST00000527797 DNAJB5O75953 348 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 RASAL1O95294 804 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 RHCEP18577 417 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 RPS4Y1P22090 263 aaKnown RBP19.46■□□□□ 0.71
VPS28-208ENST00000527797 YAP1P46937 504 aaKnown RBP19.46■□□□□ 0.71
VPS28-208ENST00000527797 ARHGDIAP52565 204 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 IST1P53990 364 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 EBPQ15125 230 aaKnown RBP19.46■□□□□ 0.71
VPS28-208ENST00000527797 NRF1Q16656 503 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 FLYWCH1Q4VC44 716 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 C9orf40Q8IXQ3 194 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 BCORP1Q8N888 145 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 GAL3ST4Q96RP7 486 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 PHOX2BQ99453 314 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 PIP5K1AQ99755 562 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 KLHL28Q9NXS3 571 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 PPIEQ9UNP9 301 aaKnown RBP19.46■□□□□ 0.71
VPS28-208ENST00000527797 U3KQV3 271 aa19.46■□□□□ 0.71
VPS28-208ENST00000527797 EPPINO95925 133 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 IGKV1D-16P01601 117 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 RRM2P31350 389 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 DNAJA1P31689 397 aaKnown RBP19.45■□□□□ 0.7
VPS28-208ENST00000527797 DCTP40126 519 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 FOLR3P41439 243 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 TAF11Q15544 211 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 DECR1Q16698 335 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 LIN52Q52LA3 116 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 TIPARPQ7Z3E1 657 aaKnown RBP19.45■□□□□ 0.7
VPS28-208ENST00000527797 STK32CQ86UX6 486 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 COMTD1Q86VU5 262 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 CYP4Z1Q86W10 505 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 TMPRSS12Q86WS5 348 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms