RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ZNF311Q5JNZ3 666 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 ATAD3BQ5T9A4 648 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 STEAP1BQ6NZ63 245 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 NIPAL3Q6P499 406 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 KDELC1Q6UW63 502 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 ARMCX2Q7L311 632 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 P4HA3Q7Z4N8 544 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 PYROXD2Q8N2H3 581 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 STKLD1Q8NE28 680 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 OR1K1Q8NGR3 316 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 ZNF606Q8WXB4 792 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 RBM18Q96H35 190 aaKnown RBP3.47□□□□□ -1.85
CD44-223ENST00000526553 SERAC1Q96JX3 654 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 CNOT6LQ96LI5 555 aaKnown RBP3.47□□□□□ -1.85
CD44-223ENST00000526553 MYCBPQ99417 103 aaPredicted RBP3.47□□□□□ -1.85
CD44-223ENST00000526553 NLNQ9BYT8 704 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 POLR1EQ9GZS1 481 aaKnown RBP3.47□□□□□ -1.85
CD44-223ENST00000526553 STARD5Q9NSY2 213 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 DHRS4-AS1Q9P1J3 65 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 B4GALT7Q9UBV7 327 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 TBK1Q9UHD2 729 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 CLASP1Q7Z460 1538 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 POLA1P09884 1462 aaPredicted RBP3.47□□□□□ -1.85
CD44-223ENST00000526553 CLRN2A0PK11 232 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 RNF222A6NCQ9 220 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 RNF212BA8MTL3 300 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 ZNF487B1APH4 448 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 WASH3PC4AMC7 463 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 H0YCG3 227 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 MPHOSPH10O00566 681 aaKnown RBP3.46□□□□□ -1.86
CD44-223ENST00000526553 MAGEB3O15480 346 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 LANCL1O43813 399 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 GMFGO60234 142 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 OR4F21O95013 312 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 PIGRP01833 764 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 IGHDP01880 384 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 CA3P07451 260 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 ASNSP08243 561 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 EPB41P11171 864 aaKnown RBP3.46□□□□□ -1.86
CD44-223ENST00000526553 PRG2P13727 222 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 KLK2P20151 261 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 PAICSP22234 425 aaKnown RBP3.46□□□□□ -1.86
CD44-223ENST00000526553 PSMA5P28066 241 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 PTPN4P29074 926 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 MAT2AP31153 395 aaKnown RBP3.46□□□□□ -1.86
CD44-223ENST00000526553 MTIF2P46199 727 aaKnown RBP3.46□□□□□ -1.86
CD44-223ENST00000526553 BRCC3P46736 316 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 HNMTP50135 292 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 KRTAP12-2P59991 146 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 ANKRD55Q3KP44 614 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 TIMM50Q3ZCQ8 353 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 SPATA46Q5T0L3 261 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 DCAF12Q5T6F0 453 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 WASH2PQ6VEQ5 465 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 ZNF600Q6ZNG1 722 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 CBWD2Q8IUF1 395 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 SLC25A36Q96CQ1 311 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 VPS35Q96QK1 796 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 CPXM1Q96SM3 734 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 ERP44Q9BS26 406 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 RMND5AQ9H871 391 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 LPAR2Q9HBW0 351 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 SLC25A19Q9HC21 320 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 AMBNQ9NP70 447 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 SNX6Q9UNH7 406 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 KLHDC2Q9Y2U9 406 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 SYNJ2O15056 1496 aa3.46□□□□□ -1.86
CD44-223ENST00000526553 TRAV9-2A0A087WT02 112 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 FAM168BA1KXE4 195 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 SRPX2O60687 465 aaPredicted RBP3.45□□□□□ -1.86
CD44-223ENST00000526553 DUSP11O75319 330 aaKnown RBP3.45□□□□□ -1.86
CD44-223ENST00000526553 HNRNPA2B1P22626 353 aaKnown RBP3.45□□□□□ -1.86
CD44-223ENST00000526553 PTGFRP43088 359 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 SGSHP51688 502 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 ARFIP1P53367 373 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 SRYQ05066 204 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 TATDN3Q17R31 274 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 NADK2Q4G0N4 442 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 FHL5Q5TD97 284 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 WDR25Q64LD2 544 aaPredicted RBP3.45□□□□□ -1.86
CD44-223ENST00000526553 SLC39A4Q6P5W5 647 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 RGS9BPQ6ZS82 235 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 CENPUQ71F23 418 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 NET1Q7Z628 596 aaPredicted RBP3.45□□□□□ -1.86
CD44-223ENST00000526553 CCDC36Q8IYA8 594 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 ZNF491Q8N8L2 437 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 SLC5A11Q8WWX8 675 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 MCHR2Q969V1 340 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 VSTM2LQ96N03 204 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 RANBP9Q96S59 729 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 Q9HAA7 133 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 TRPV5Q9NQA5 729 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 ZNF446Q9NWS9 450 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 GDAP2Q9NXN4 497 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 ARMCX1Q9P291 453 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 IKZF3Q9UKT9 509 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 FZR1Q9UM11 496 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 RNF6Q9Y252 685 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 SLC9A8Q9Y2E8 581 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 FKBP7Q9Y680 259 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms