RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 DDX31Q9H8H2 851 aaKnown RBP4.29□□□□□ -1.72
CD44-220ENST00000525688 APOBEC3GQ9HC16 384 aaKnown RBP4.29□□□□□ -1.72
CD44-220ENST00000525688 ZDHHC18Q9NUE0 388 aa4.29□□□□□ -1.72
CD44-220ENST00000525688 DDX28Q9NUL7 540 aaKnown RBP4.29□□□□□ -1.72
CD44-220ENST00000525688 GCNT4Q9P109 453 aa4.29□□□□□ -1.72
CD44-220ENST00000525688 HMGXB4Q9UGU5 601 aa4.29□□□□□ -1.72
CD44-220ENST00000525688 PPIL1Q9Y3C6 166 aa4.29□□□□□ -1.72
CD44-220ENST00000525688 SCN9AQ15858 1988 aa4.29□□□□□ -1.72
CD44-220ENST00000525688 ZNF609O15014 1411 aa4.29□□□□□ -1.72
CD44-220ENST00000525688 PCSK5Q92824 1860 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 SCN4AP35499 1836 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 SPEF2Q9C093 1822 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 A0A1B0GUL6 1792 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 ADAMTSL1Q8N6G6 1762 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 TRAV26-1A0A087WT03 109 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 A0A087WUV0 522 aaPredicted RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 SAA2-SAA4A0A096LPE2 208 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 A0A1W2PPI3 338 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 A0A1W2PPK0 400 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 TMEM129A0AVI4 362 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 TMEM89A2RUT3 159 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 HAS3O00219 553 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 FOXE1O00358 373 aaPredicted RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 GAPDHSO14556 408 aaPredicted RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 ABCD4O14678 606 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 KLF11O14901 512 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 LCMT2O60294 686 aaKnown RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 LRP3O75074 770 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 CIAO1O76071 339 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 ACSL3O95573 720 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 IGHV4-39P01824 125 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 LYNP07948 512 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 RPS12P25398 132 aaKnown RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 DPP4P27487 766 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 PIK3R1P27986 724 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 EPHX2P34913 555 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 CDX1P47902 265 aaPredicted RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 POU3F4P49335 361 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 CSNK1EP49674 416 aaKnown RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 THBS3P49746 956 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 THOP1P52888 689 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 ART1P52961 327 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 DAOAP59103 153 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 RPS18P62269 152 aaKnown RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 PITX1P78337 314 aaPredicted RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 CCZ1BP86790 482 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 CCZ1P86791 482 aaPredicted RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 PPIDQ08752 370 aaKnown RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 MERTKQ12866 999 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 KIR2DS3Q14952 304 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 USF2Q15853 346 aaPredicted RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 TATDN3Q17R31 274 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 POM121L1PQ3SYA9 428 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 SMUG1Q53HV7 270 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 MLIPQ5VWP3 458 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 PLCXD3Q63HM9 321 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 SPECC1LQ69YQ0 1117 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 ASPHD2Q6ICH7 369 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 SLC25A25Q6KCM7 469 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 TTC27Q6P3X3 843 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 CBLN3Q6UW01 205 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 EIF3MQ7L2H7 374 aaKnown RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 LINC00523Q86TU6 105 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 STHQ8IWL8 128 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 BMPERQ8N8U9 685 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 FNDC5Q8NAU1 212 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 NPEPL1Q8NDH3 523 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 OR13F1Q8NGS4 319 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 OR13J1Q8NGT2 312 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 ZNF461Q8TAF7 563 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 FGFBP3Q8TAT2 258 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 KIFAP3Q92845 792 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 RAB1CQ92928 201 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 TOP1MTQ969P6 601 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 RBM41Q96IZ5 413 aaKnown RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 ALS2CR12Q96Q35 445 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 C17orf62Q9BQA9 187 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 CHRDL1Q9BU40 450 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 ANKRD60Q9BZ19 345 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 COA1Q9GZY4 146 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 HDHD2Q9H0R4 259 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 LRRC4Q9HBW1 653 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 SGK2Q9HBY8 427 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 MRPL47Q9HD33 250 aaKnown RBP4.28□□□□□ -1.72
CD44-220ENST00000525688 CD209Q9NNX6 404 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 DNAJC4Q9NNZ3 241 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 SEC14L3Q9UDX4 400 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 STAP1Q9ULZ2 295 aa4.28□□□□□ -1.72
CD44-220ENST00000525688 A0A1W2PPV4 95 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 A0A1W2PRB8 838 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 TULP2O00295 520 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 INSIG1O15503 277 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 PSMD3O43242 534 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 NME2P1O60361 137 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 PRAF2O60831 178 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 CTSVO60911 334 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 CABYRO75952 493 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 MYO1DO94832 1006 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 NTN1O95631 604 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 MBP02144 154 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms