RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 BSPRYQ5W0U4 402 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 LRRC8BQ6P9F7 803 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 NOTCH2NLQ7Z3S9 236 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 P4HA3Q7Z4N8 544 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 LCA5Q86VQ0 697 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 C10orf67Q8IYJ2 551 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 STKLD1Q8NE28 680 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 PCNPQ8WW12 178 aaKnown RBP6.23□□□□□ -1.41
LSM1-202ENST00000520286 CFAP53Q96M91 514 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 ANKRD27Q96NW4 1050 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 TNFRSF13CQ96RJ3 184 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 RBM24Q9BX46 236 aaKnown RBP6.23□□□□□ -1.41
LSM1-202ENST00000520286 MRPL13Q9BYD1 178 aaKnown RBP6.23□□□□□ -1.41
LSM1-202ENST00000520286 ZSCAN16Q9H4T2 348 aaPredicted RBP6.23□□□□□ -1.41
LSM1-202ENST00000520286 COG4Q9H9E3 785 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 FKBP7Q9Y680 259 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 CD163L1Q9NR16 1453 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 A0A087X002 238 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 USP27XA6NNY8 438 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 MPHOSPH10O00566 681 aaKnown RBP6.22□□□□□ -1.41
LSM1-202ENST00000520286 DUSP11O75319 330 aaKnown RBP6.22□□□□□ -1.41
LSM1-202ENST00000520286 IVLP07476 585 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 ZNF26P17031 533 aaPredicted RBP6.22□□□□□ -1.41
LSM1-202ENST00000520286 TSPAN8P19075 237 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 HNRNPA2B1P22626 353 aaKnown RBP6.22□□□□□ -1.41
LSM1-202ENST00000520286 PSMA5P28066 241 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 AXLP30530 894 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 HNMTP50135 292 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 SRYQ05066 204 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 ENPP2Q13822 863 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 TRIP10Q15642 601 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 UPP1Q16831 310 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 ECSCRQ19T08 205 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 RHBDD2Q6NTF9 364 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 RANBP3LQ86VV4 465 aaPredicted RBP6.22□□□□□ -1.41
LSM1-202ENST00000520286 EGFL6Q8IUX8 553 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 KLHDC8BQ8IXV7 354 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 MNS1Q8NEH6 495 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 OR1K1Q8NGR3 316 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 OR4F5Q8NH21 305 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 SLC25A36Q96CQ1 311 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 LRRCC1Q9C099 1032 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 RAB33BQ9H082 229 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 RAI14Q9P0K7 980 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 CACNG5Q9UF02 275 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 FZR1Q9UM11 496 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 SNX6Q9UNH7 406 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 TNFRSF18Q9Y5U5 241 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 KLF2Q9Y5W3 355 aaPredicted RBP6.22□□□□□ -1.41
LSM1-202ENST00000520286 PCNTO95613 3336 aa6.22□□□□□ -1.41
LSM1-202ENST00000520286 RGPD5Q99666 1765 aa6.21□□□□□ -1.41
LSM1-202ENST00000520286 KIF20BQ96Q89 1820 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 LOC105371242A0A075B767 164 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 FBP2O00757 339 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 MFN2O95140 757 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 TPM1P09493 284 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 ANXA4P09525 319 aaPredicted RBP6.21□□□□□ -1.42
LSM1-202ENST00000520286 PPIAP62937 165 aaKnown RBP6.21□□□□□ -1.42
LSM1-202ENST00000520286 SNTB2Q13425 540 aaKnown RBP6.21□□□□□ -1.42
LSM1-202ENST00000520286 NADK2Q4G0N4 442 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 ARHGAP11AQ6P4F7 1023 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 KCNMB4Q86W47 210 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 GRAMD2AQ8IUY3 354 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 LRRC8AQ8IWT6 810 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 OR2T34Q8NGX1 318 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 OR2T6Q8NHC8 308 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 ATXN7L3BQ96GX2 97 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 LITAFQ99732 161 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 RPAP3Q9H6T3 665 aaPredicted RBP6.21□□□□□ -1.42
LSM1-202ENST00000520286 KAT8Q9H7Z6 458 aaKnown RBP6.21□□□□□ -1.42
LSM1-202ENST00000520286 WDR41Q9HAD4 459 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 NRN1Q9NPD7 142 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 EIF3KQ9UBQ5 218 aaKnown RBP6.21□□□□□ -1.42
LSM1-202ENST00000520286 IKZF3Q9UKT9 509 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 ATP6V1DQ9Y5K8 247 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 PHLPP2Q6ZVD8 1323 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 DLG5Q8TDM6 1919 aa6.21□□□□□ -1.42
LSM1-202ENST00000520286 IGHV3-38A0A0C4DH36 116 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 PRSS44E7EML9 344 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 H3BMH7 237 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 H3BTX0 84 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 GMFGO60234 142 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 IGLV1-44P01699 117 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 ASNSP08243 561 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 SLC1A6P48664 564 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 NAPAP54920 295 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 RAG2P55895 527 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 TRDNQ13061 729 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 EXOSC2Q13868 293 aaKnown RBP6.2□□□□□ -1.42
LSM1-202ENST00000520286 TMEM187Q14656 261 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 SLC36A3Q495N2 470 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 NIPAL3Q6P499 406 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 KDELC1Q6UW63 502 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 CES3Q6UWW8 571 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 CCDC36Q8IYA8 594 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 C11orf45Q8TAV5 145 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 SPPL2AQ8TCT8 520 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 C11orf52Q96A22 123 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 VPS35Q96QK1 796 aa6.2□□□□□ -1.42
LSM1-202ENST00000520286 TSPAN18Q96SJ8 248 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms