RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MSI1O43347 362 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 STBD1O95210 358 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SMIM10L2AP0DMW4 78 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SMIM10L2BP0DMW5 78 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 LAG3P18627 525 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 MAKP20794 623 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 MFGE8Q08431 387 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 HABP2Q14520 560 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 GLB1L2Q8IW92 636 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 OR6F1Q8NGZ6 308 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 OR5W2Q8NH69 310 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 LINC01599Q8WXQ3 324 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF582Q96NG8 517 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 NTPCRQ9BSD7 190 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 METTL17Q9H7H0 456 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 C1orf123Q9NWV4 160 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 NR2E3Q9Y5X4 410 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 ZFP37Q9Y6Q3 630 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SETBP1Q9Y6X0 1596 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 MANSC4A6NHS7 340 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF587BE7ETH6 402 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 YY2O15391 372 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 MMP2P08253 660 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 DDCP20711 480 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 HLA-DMAP28067 261 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 CRABP1P29762 137 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 NDUFV1P49821 464 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 FLYWCH1Q4VC44 716 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 PDLIM3Q53GG5 364 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 TCTE1Q5JU00 501 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 KIAA0319Q5VV43 1072 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 C1orf127Q8N9H9 656 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 OR4K5Q8NGD3 323 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 OR6K2Q8NGY2 324 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 ST8SIA4Q92187 359 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 LRRC46Q96FV0 321 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 OR7D2Q96RA2 312 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC25A21Q9BQT8 299 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 MED18Q9BUE0 208 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 ALG8Q9BVK2 526 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SIX2Q9NPC8 291 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 ADARB2Q9NS39 739 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SPHK1Q9NYA1 384 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 IL37Q9NZH6 218 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 CYB5R1Q9UHQ9 305 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 KCNQ1P51787 676 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 RPS13P62277 151 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC14A1Q13336 389 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 MAMDC2Q7Z304 686 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 C2orf73Q8N5S3 287 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC2A12Q8TD20 617 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 MUL1Q969V5 352 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 NUS1Q96E22 293 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 KAZALD1Q96I82 304 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 C12orf57Q99622 126 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 ACKR4Q9NPB9 350 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 PRDM9Q9NQV7 894 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 C2orf42Q9NWW7 574 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 CPNE7Q9UBL6 633 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 UBL3O95164 117 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 NDUFB2O95178 105 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 SERPINA5P05154 406 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 STAG3L2P0CL84 134 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF43P17038 809 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 ODF4Q2M2E3 257 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 LYRM7Q5U5X0 104 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 H3F3CQ6NXT2 135 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 TPRG1Q6ZUI0 275 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 OR5M8Q8NGP6 311 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 JSRP1Q96MG2 331 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 CRB3Q9BUF7 120 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 MRPL15Q9P015 296 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 VAPAQ9P0L0 249 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 TESQ9UGI8 421 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 OR51F1A6NGY5 319 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 A6NIZ1 184 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 CSTAP01040 98 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 MAS1P04201 325 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 ARSBP15848 533 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 TAGLN2P37802 199 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 RAP1BP61224 184 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 RAP1AP62834 184 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 CNKSR3Q6P9H4 555 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 OR52P1PQ8NH57 321 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 HPSE2Q8WWQ2 592 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC2A13Q96QE2 648 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 AGPAT4Q9NRZ5 378 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 NLE1Q9NVX2 485 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 REV1Q9UBZ9 1251 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 OARD1Q9Y530 152 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 MROH6A6NGR9 719 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 NDUFS4O43181 175 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 KNG1P01042 644 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 HLA-AP01891 365 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 PCCBP05166 539 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 SYN1P17600 705 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 BCKDHBP21953 392 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 GABRB3P28472 473 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 VIPR1P32241 457 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 ARL2P36404 184 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms