RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CD46P15529 392 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 NAGAP17050 411 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 ATP6V1C1P21283 382 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 PNLIPRP2P54317 469 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 PSMD4P55036 377 aaKnown RBP10.94□□□□□ -0.66
CUX1-210ENST00000497815 GPR85P60893 370 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 PSPHP78330 225 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 SYPL1Q16563 259 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 NADK2Q4G0N4 442 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 GPAT3Q53EU6 434 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 ZNF766Q5HY98 468 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 PRAMEF20Q5VT98 475 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 NANOGP8Q6NSW7 305 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 NUP54Q7Z3B4 507 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 ZAR1Q86SH2 424 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 PTRH1Q86Y79 214 aaKnown RBP10.94□□□□□ -0.66
CUX1-210ENST00000497815 RBMXL3Q8N7X1 1067 aaKnown RBP10.94□□□□□ -0.66
CUX1-210ENST00000497815 ANKFN1Q8N957 763 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 PSD4Q8NDX1 1056 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 MDS2Q8NDY4 140 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 HGDQ93099 445 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 MAL2Q969L2 176 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 ROPN1LQ96C74 230 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 NSL1Q96IY1 281 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 NODALQ96S42 347 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 UBL7Q96S82 380 aaPredicted RBP10.94□□□□□ -0.66
CUX1-210ENST00000497815 G6PC3Q9BUM1 346 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 TRIM45Q9H8W5 580 aaPredicted RBP10.94□□□□□ -0.66
CUX1-210ENST00000497815 NANOGQ9H9S0 305 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 TIMMDC1Q9NPL8 285 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 CORO2BQ9UQ03 480 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 PKD1L2Q7Z442 2459 aa10.94□□□□□ -0.66
CUX1-210ENST00000497815 TPRP12270 2363 aaKnown RBP10.93□□□□□ -0.66
CUX1-210ENST00000497815 NPIPA5A0A0B4J1W7 369 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 TRAV17A0A0B4J275 112 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 PRAMEF27A3QJZ7 478 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 CCT8L1PA6NM43 557 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 NPIPA7E9PJI5 369 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SLC28A2O43868 658 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 HS6ST1O60243 411 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 UBOX5O94941 541 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SOX30O94993 753 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 UTS2O95399 124 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 P04436 131 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 BCHEP06276 602 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SP1P08047 785 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 NPIPA8P0DM63 369 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SLC6A2P23975 617 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 RNF144AP50876 292 aaPredicted RBP10.93□□□□□ -0.66
CUX1-210ENST00000497815 HPCAP84074 193 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 FUT5Q11128 374 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 FADDQ13158 208 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 EFR3AQ14156 821 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 ZNF169Q14929 603 aaPredicted RBP10.93□□□□□ -0.66
CUX1-210ENST00000497815 GPR68Q15743 365 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 CYP51A1Q16850 503 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 ARHGAP11BQ3KRB8 267 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 FLYWCH1Q4VC44 716 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 GCNT6Q5T4J0 391 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SLC22A10Q63ZE4 541 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SLC6A19Q695T7 634 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 BICRALQ6AI39 1079 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SLC25A25Q6KCM7 469 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 Q6ZS92 163 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 HMGN2P46Q86SG4 172 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 HPS6Q86YV9 775 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 DND1Q8IYX4 353 aaKnown RBP10.93□□□□□ -0.66
CUX1-210ENST00000497815 GOLM1Q8NBJ4 401 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 CHDHQ8NE62 594 aaPredicted RBP10.93□□□□□ -0.66
CUX1-210ENST00000497815 FBXO27Q8NI29 283 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 FAM110BQ8TC76 370 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SPPL2AQ8TCT8 520 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 TMCO6Q96DC7 493 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SGCZQ96LD1 299 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SDF2Q99470 211 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SH3GL1Q99961 368 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 METTL7AQ9H8H3 244 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 SACM1LQ9NTJ5 587 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 P2RX2Q9UBL9 471 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 MKLN1Q9UL63 735 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 B3GNT3Q9Y2A9 372 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 L3MBTL1Q9Y468 752 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 CHCHD2Q9Y6H1 151 aaPredicted RBP10.93□□□□□ -0.66
CUX1-210ENST00000497815 MGAQ8IWI9 3026 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 DSPP15924 2871 aaKnown RBP10.93□□□□□ -0.66
CUX1-210ENST00000497815 DOCK10Q96BY6 2186 aa10.93□□□□□ -0.66
CUX1-210ENST00000497815 ITPR1Q14643 2758 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 A0A0G2JMM0 328 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 A0A1W2PPB8 328 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 A0A1W2PRS3 328 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 C2orf72A6NCS6 295 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 TMEM247A6NEH6 219 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 PRAMEF25A6NGN4 478 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 KIR3DP1A8MWS1 328 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 B2RBV5 119 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 ATXN7O15265 892 aaPredicted RBP10.92□□□□□ -0.66
CUX1-210ENST00000497815 SCO2O43819 266 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 NME2P1O60361 137 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 FCMRO60667 390 aa10.92□□□□□ -0.66
CUX1-210ENST00000497815 TNFRSF21O75509 655 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms