RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 C2orf74A8MZ97 194 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 DISC1C4P0D8 188 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 ITGA3P26006 1051 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 CCSMST1Q4G0I0 132 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 KRT77Q7Z794 578 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 ECHDC3Q96DC8 303 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 TSNAXQ99598 290 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 DOCK3Q8IZD9 2030 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 FABP7O15540 132 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 ACVR1Q04771 509 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 TRAM2Q15035 370 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 SIGIRRQ6IA17 410 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 TMED4Q7Z7H5 227 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 PDZD3Q86UT5 571 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 MOSPD2Q8NHP6 518 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 CD180Q99467 661 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 TBL1XR1Q9BZK7 514 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 NTN4Q9HB63 628 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 WNK3Q9BYP7 1800 aa15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 FLRT2O43155 660 aa15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 IFNA6P05013 189 aa15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 GDI2P50395 445 aaKnown RBP15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 DEFB110Q30KQ9 67 aa15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 FAM122CQ6P4D5 195 aa15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 OR5J2Q8NH18 312 aa15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 ARRDC3Q96B67 414 aa15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 TRIM43Q96BQ3 446 aaPredicted RBP15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 GPN3Q9UHW5 284 aaPredicted RBP15.39■□□□□ 0.06
CCDC88B-209ENST00000494080 LINC01553A4QN01 128 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 PRKYO43930 277 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 IMPA1P29218 277 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 GABRA3P34903 492 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 SWI5Q1ZZU3 235 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 OR10H5Q8NGA6 315 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 PIGUQ9H490 435 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 BRF2Q9HAW0 419 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 ELL3Q9HB65 397 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 GALNT9Q9HCQ5 603 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 LYARQ9NX58 379 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 NUP214P35658 2090 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 PKLRP30613 574 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 MASP1P48740 699 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 CD300LGQ6UXG3 332 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 OR4K5Q8NGD3 323 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 RBFOX1Q9NWB1 397 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 CUEDC1Q9NWM3 386 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 TBX21Q9UL17 535 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 MED31Q9Y3C7 131 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF831Q5JPB2 1677 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 SBF2Q86WG5 1849 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 TAPBPO15533 448 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 EMC8O43402 210 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 MT-ND5P03915 603 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 MRPL3P09001 348 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 JUNDP17535 347 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 BMP8BP34820 402 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 CDKN2CP42773 168 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 RRAS2P62070 204 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 STK11Q15831 433 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 LEXMQ3ZCV2 418 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 TMEM31Q5JXX7 168 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 SLX4IPQ5VYV7 408 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 KDM4DQ6B0I6 523 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 BMP8AQ7Z5Y6 402 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 GATSQ8NAP1 163 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 PHOSPHO1Q8TCT1 267 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 AIFM2Q9BRQ8 373 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 CDADC1Q9BWV3 514 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 SLC6A16Q9GZN6 736 aa15.39■□□□□ 0.05
CCDC88B-209ENST00000494080 KHNYNO15037 678 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 PEX11BO96011 259 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 CSN2P05814 226 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 DDCP20711 480 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ACVR1BP36896 505 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 FIGNL1Q6PIW4 674 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 FAM198BQ6UWH4 519 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 MSANTD1Q6ZTZ1 278 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 GRAMD2AQ8IUY3 354 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 PDZD9Q8IXQ8 264 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 OR2L2Q8NH16 312 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 OR51A7Q8NH64 312 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ZSWIM3Q96MP5 696 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 S100A13Q99584 98 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF471Q9BX82 626 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ACTR6Q9GZN1 396 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 OR10A4Q9H209 315 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 NIPAL2Q9H841 368 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 APOBEC3BQ9UH17 382 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 CDH10Q9Y6N8 788 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 TRIP12Q14669 1992 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ATP6V1G2-DDX39BF2Z307 99 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 IL1AP01583 271 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ARSBP15848 533 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ACVR2AP27037 513 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 RPS19P39019 145 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 PXNP49023 591 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 MCCD1P59942 119 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ADAM8P78325 824 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 MLIPQ5VWP3 458 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms