RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 CIDECQ96AQ7 238 aaPredicted RBP6.33□□□□□ -1.4
HDAC3-209ENST00000486618 CCDC140Q96MF4 163 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 C6orf62Q9GZU0 229 aaPredicted RBP6.33□□□□□ -1.4
HDAC3-209ENST00000486618 PRDM14Q9GZV8 571 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 FAM107BQ9H098 131 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 OR51V1Q9H2C8 321 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 EVA1AQ9H8M9 152 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 NEK6Q9HC98 313 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 C12orf4Q9NQ89 552 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 RIC8BQ9NVN3 520 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 SPHK1Q9NYA1 384 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 NKIRAS1Q9NYS0 192 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 CTSFQ9UBX1 484 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF282Q9UDV7 671 aaPredicted RBP6.33□□□□□ -1.4
HDAC3-209ENST00000486618 TINAGQ9UJW2 476 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 C3orf18Q9UK00 162 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 HSF4Q9ULV5 492 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 PACSIN2Q9UNF0 486 aaPredicted RBP6.33□□□□□ -1.4
HDAC3-209ENST00000486618 PPIEQ9UNP9 301 aaKnown RBP6.33□□□□□ -1.4
HDAC3-209ENST00000486618 MEMO1Q9Y316 297 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 SH3GLB1Q9Y371 365 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 ARL5AQ9Y689 179 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 CSMD2Q7Z408 3487 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 AKAP9Q99996 3911 aa6.33□□□□□ -1.4
HDAC3-209ENST00000486618 CPAMD8Q8IZJ3 1885 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 A0A087X0T9 212 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 BTBD17A6NE02 478 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 SRPX2O60687 465 aaPredicted RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 CLPXO76031 633 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 PDE5AO76074 875 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 AP2A2O94973 939 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 SEMA3DO95025 777 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 WDPCPO95876 746 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 CH25HO95992 272 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 F10P00742 488 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 FTH1P02794 183 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 TP53P04637 393 aaPredicted RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 SERPING1P05155 500 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 FAM228BP0C875 321 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 KITP10721 976 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 M6PRP20645 277 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 SOAT1P35610 550 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 OR1D4P47884 311 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 ENTPD1P49961 510 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 MAP2K6P52564 334 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 ARHGDIAP52565 204 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 SUCLG1P53597 346 aaKnown RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 PNLIPRP1P54315 467 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 EMP2P54851 167 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 GEMP55040 296 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 PCBP3P57721 371 aaKnown RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 GPX6P59796 221 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 SELENOVP59797 346 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 DYNLT1P63172 113 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 TFDP2Q14188 446 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 CAPRIN1Q14444 709 aaKnown RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 IRF3Q14653 427 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 USF2Q15853 346 aaPredicted RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 HYAL4Q2M3T9 481 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 KLHL38Q2WGJ6 581 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF658BQ4V348 819 aaPredicted RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 KLHL26Q53HC5 615 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 THEMIS2Q5TEJ8 643 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 SIGIRRQ6IA17 410 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 PRMT9Q6P2P2 845 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 FIGLAQ6QHK4 219 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 Q6ZPB1 254 aaPredicted RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 KCTD9Q7L273 389 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF573Q86YE8 665 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 CPNE8Q86YQ8 564 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 KLHL7Q8IXQ5 586 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 PRSS58Q8IYP2 241 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 MMP21Q8N119 569 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 ACBD4Q8NC06 268 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 RBM15BQ8NDT2 890 aaKnown RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 OR5T1Q8NG75 326 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 OR8K1Q8NGG5 319 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 OR5K2Q8NHB8 316 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 PHF10Q8WUB8 498 aaKnown RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 C8orf44Q96CB5 159 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 OXNAD1Q96HP4 312 aaPredicted RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 MAP6Q96JE9 813 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 RBM4BQ9BQ04 359 aaKnown RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 FUZQ9BT04 418 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 RBM4Q9BWF3 364 aaKnown RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 LRMDAQ9H2I8 198 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 FAM96AQ9H5X1 160 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 CHODLQ9H9P2 273 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 STMN3Q9NZ72 180 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.32□□□□□ -1.4
HDAC3-209ENST00000486618 TMCO1Q9UM00 188 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 CDC14AQ9UNH5 594 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF835Q9Y2P0 537 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 MAB21L2Q9Y586 359 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 MAU2Q9Y6X3 613 aa6.32□□□□□ -1.4
HDAC3-209ENST00000486618 IGLV3-16A0A075B6K0 115 aa6.31□□□□□ -1.4
HDAC3-209ENST00000486618 IGLV3-12A0A075B6K2 115 aa6.31□□□□□ -1.4
HDAC3-209ENST00000486618 IGHV1-45A0A0A0MS14 117 aa6.31□□□□□ -1.4
HDAC3-209ENST00000486618 A0A1W2PQ72 361 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms