RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 GRK2P25098 689 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 CPOXP36551 454 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 MAGEA12P43365 314 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 CLDN15P56746 228 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 MRPS22P82650 360 aaKnown RBP11.75□□□□□ -0.53
HDAC6-227ENST00000485102 GUSBP1Q15486 140 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 TSNAXIP1Q2TAA8 658 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 ZNF628Q5EBL2 1059 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 VWA1Q6PCB0 445 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 LRIG3Q6UXM1 1119 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 CHMP1BQ7LBR1 199 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 HOMEZQ8IX15 550 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 PLD6Q8N2A8 252 aaKnown RBP11.75□□□□□ -0.53
HDAC6-227ENST00000485102 FADS6Q8N9I5 356 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 OR4F6Q8NGB9 312 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 PHF21BQ96EK2 531 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 PGM2Q96G03 612 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 ADOQ96SZ5 270 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 CCL19Q99731 98 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 MED18Q9BUE0 208 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 TMEM109Q9BVC6 243 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 C1QTNF3Q9BXJ4 246 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 SHCBP1LQ9BZQ2 653 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 RNF122Q9H9V4 155 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 KLHL28Q9NXS3 571 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 SENP1Q9P0U3 644 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 SLC12A4Q9UP95 1085 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 ZNF175Q9Y473 711 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 ABCA1O95477 2261 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 SMNDC1O75940 238 aaKnown RBP eCLIP11.74□□□□□ -0.531e-6■■□□□ 12.9
HDAC6-227ENST00000485102 OTCP00480 354 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 PDYNP01213 254 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 RPS17P08708 135 aaKnown RBP11.74□□□□□ -0.53
HDAC6-227ENST00000485102 HSD3B1P14060 373 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 POU2F1P14859 743 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 HSD3B2P26439 372 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 CCKARP32238 428 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 ARL1P40616 181 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-227ENST00000485102 MRPS35P82673 323 aaKnown RBP11.74□□□□□ -0.53
HDAC6-227ENST00000485102 GANABQ14697 944 aaKnown RBP11.74□□□□□ -0.53
HDAC6-227ENST00000485102 LTB4RQ15722 352 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 GLYR1Q49A26 553 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-227ENST00000485102 TIFABQ6ZNK6 161 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 P4HA3Q7Z4N8 544 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 CCDC116Q8IYX3 515 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 MEIOBQ8N635 442 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 SELENOMQ8WWX9 145 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 PIK3IP1Q96FE7 263 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 NSUN5Q96P11 429 aaKnown RBP11.74□□□□□ -0.53
HDAC6-227ENST00000485102 FAM111AQ96PZ2 611 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 FARSBQ9NSD9 589 aaKnown RBP11.74□□□□□ -0.53
HDAC6-227ENST00000485102 ZNF701Q9NV72 531 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-227ENST00000485102 HEY2Q9UBP5 337 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 VPS29Q9UBQ0 182 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 MCM8Q9UJA3 840 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 DKKL1Q9UK85 242 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 UTS2RQ9UKP6 389 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 SNX6Q9UNH7 406 aa11.74□□□□□ -0.53
HDAC6-227ENST00000485102 SMIM24O75264 130 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 PPP3CBP16298 524 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 KRT20P35900 424 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 CORO7P57737 925 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 OR5M10Q6IEU7 315 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 LETMD1Q6P1Q0 360 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 SH2D5Q6ZV89 423 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 LARP4Q71RC2 724 aaKnown RBP eCLIP11.73□□□□□ -0.53
HDAC6-227ENST00000485102 HDXQ7Z353 690 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 GSPT2Q8IYD1 628 aaKnown RBP11.73□□□□□ -0.53
HDAC6-227ENST00000485102 C1orf52Q8N6N3 182 aaKnown RBP11.73□□□□□ -0.53
HDAC6-227ENST00000485102 CNEP1R1Q8N9A8 125 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 ZNF483Q8TF39 744 aaPredicted RBP11.73□□□□□ -0.53
HDAC6-227ENST00000485102 FIG4Q92562 907 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 ZNF845Q96IR2 970 aaPredicted RBP11.73□□□□□ -0.53
HDAC6-227ENST00000485102 SDHAF3Q9NRP4 125 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 ZNF225Q9UK10 706 aa11.73□□□□□ -0.53
HDAC6-227ENST00000485102 TRIM64A6NGJ6 449 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 TRIM64BA6NI03 449 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 FADS1O60427 444 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 CNOT4O95628 575 aaKnown RBP11.72□□□□□ -0.53
HDAC6-227ENST00000485102 GSTA1P08263 222 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 IL11P20809 199 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 TBXA2RP21731 343 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 PCSK6P29122 969 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 IL12BP29460 328 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 EVI2BP34910 448 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 CCT5P48643 541 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 PTH2RP49190 550 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 PPP2R2BQ00005 443 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 PSG6Q00889 435 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 CYP27C1Q4G0S4 372 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 SGO1Q5FBB7 561 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 GALNT18Q6P9A2 607 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 NPSR1Q6W5P4 371 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 C22orf34Q6ZV56 151 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 PLEKHM3Q6ZWE6 761 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 TMEM151AQ8N4L1 468 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 METTL25Q8N6Q8 603 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 GOLGA6L1Q8N7Z2 621 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 ZNF610Q8N9Z0 462 aa11.72□□□□□ -0.53
HDAC6-227ENST00000485102 OR2M3Q8NG83 312 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms