RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 UGT1A4P22310 534 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 NDUFV3P56181 108 aaKnown RBP4.21□□□□□ -1.74
UPF3B-203ENST00000478840 ATXN7L3Q14CW9 347 aaPredicted RBP4.21□□□□□ -1.74
UPF3B-203ENST00000478840 SYPL1Q16563 259 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 CELF3Q5SZQ8 465 aaKnown RBP4.21□□□□□ -1.74
UPF3B-203ENST00000478840 LCE1AQ5T7P2 110 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 CEACAM19Q7Z692 300 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 LRRTM1Q86UE6 522 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 SYT14Q8NB59 555 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 OR13C2Q8NGS9 318 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 LRRC15Q8TF66 581 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 FAM3CQ92520 227 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 C11orf24Q96F05 449 aaPredicted RBP4.21□□□□□ -1.74
UPF3B-203ENST00000478840 ART5Q96L15 291 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 ZBTB18Q99592 522 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 BARHL1Q9BZE3 327 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 TRIM9Q9C026 710 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 SP140LQ9H930 580 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 ELOVL3Q9HB03 270 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 ELL3Q9HB65 397 aaPredicted RBP4.21□□□□□ -1.74
UPF3B-203ENST00000478840 ESM1Q9NQ30 184 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 ZDHHC18Q9NUE0 388 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 WDR45Q9Y484 360 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 METP08581 1390 aa4.21□□□□□ -1.74
UPF3B-203ENST00000478840 PRR23AA6NEV1 266 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 CCDC169A6NNP5 214 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 K7ERI5 159 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 AP3B1O00203 1094 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 BTN3A3O00478 584 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 SOCS3O14543 225 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 DCXO43602 365 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 IDH3BO43837 385 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 IGF1P05019 195 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 TPM2P07951 284 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 SNRPCP09234 159 aaKnown RBP4.2□□□□□ -1.74
UPF3B-203ENST00000478840 ZNF44P15621 663 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 XRCC1P18887 633 aaPredicted RBP4.2□□□□□ -1.74
UPF3B-203ENST00000478840 UQCRC2P22695 453 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 IGFBP5P24593 272 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 PPP2R1BP30154 601 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 SLC1A4P43007 532 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 POU3F4P49335 361 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 RIDAP52758 137 aaKnown RBP4.2□□□□□ -1.74
UPF3B-203ENST00000478840 PLA2G16P53816 162 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 RPS6P62753 249 aaKnown RBP4.2□□□□□ -1.74
UPF3B-203ENST00000478840 ZNF33BQ06732 778 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 NECTIN1Q15223 517 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 RAB35Q15286 201 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 SIX1Q15475 284 aaPredicted RBP4.2□□□□□ -1.74
UPF3B-203ENST00000478840 UBE2V2Q15819 145 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 PCK2Q16822 640 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 DCST2Q5T1A1 773 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 APOOLQ6UXV4 268 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 STAC2Q6ZMT1 411 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 CTNNBL1Q8WYA6 563 aaPredicted RBP4.2□□□□□ -1.74
UPF3B-203ENST00000478840 CNDP1Q96KN2 507 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 UPF3AQ9H1J1 476 aaKnown RBP4.2□□□□□ -1.74
UPF3B-203ENST00000478840 RHOJQ9H4E5 214 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 MRPL39Q9NYK5 338 aaKnown RBP4.2□□□□□ -1.74
UPF3B-203ENST00000478840 ANAPC7Q9UJX3 599 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 MGAT4AQ9UM21 535 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 GMPPBQ9Y5P6 360 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 AUP1Q9Y679 476 aa4.2□□□□□ -1.74
UPF3B-203ENST00000478840 PDHXO00330 501 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 ARPC3O15145 178 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 PPIHO43447 177 aaKnown RBP4.19□□□□□ -1.74
UPF3B-203ENST00000478840 JCHAINP01591 159 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 SPRP35270 261 aaPredicted RBP4.19□□□□□ -1.74
UPF3B-203ENST00000478840 SULT1E1P49888 294 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 EXOC3L2Q2M3D2 409 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 FILIP1LQ4L180 1135 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 BOLA3Q53S33 107 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 SEL1L2Q5TEA6 688 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 RUSC1-AS1Q66K80 236 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 LANCL3Q6ZV70 420 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 HSD11B1LQ7Z5J1 315 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 TMEM17Q86X19 198 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 RNF130Q86XS8 419 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 Q8NBF4 154 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 DNAJA3Q96EY1 480 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 COQ2Q96H96 371 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 OPRPNQ99935 248 aaPredicted RBP4.19□□□□□ -1.74
UPF3B-203ENST00000478840 ATF6BQ99941 703 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 VPS33BQ9H267 617 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 ADGRL4Q9HBW9 690 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 PIPOXQ9P0Z9 390 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 CPQQ9Y646 472 aa4.19□□□□□ -1.74
UPF3B-203ENST00000478840 A0A087WYN8 130 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 FOXI3A8MTJ6 420 aaPredicted RBP4.18□□□□□ -1.74
UPF3B-203ENST00000478840 EPM2AB3EWF7 344 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 C11orf98E9PRG8 122 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 CASKO14936 926 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 ARHGEF9O43307 516 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 STX11O75558 287 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 IL1BP01584 269 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 IGHV3-9P01782 118 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 WNT2P09544 360 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 PGCP20142 388 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 CALB2P22676 271 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 LMO2P25791 158 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms