RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 HOXB13Q92826 284 aaPredicted RBP11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 STARD4Q96DR4 205 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ACBD3Q9H3P7 528 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GRID1Q9ULK0 1009 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 A0A1W2PNV4 684 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 H0Y3Z8 333 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 UPK1AO00322 258 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MSTNO14793 375 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FAM153BP0C7A2 387 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PYGBP11216 843 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CD53P19397 219 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EVI2BP34910 448 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GCKP35557 465 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ZNF763Q0D2J5 394 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SLC29A2Q14542 456 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 KIAA0040Q15053 153 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GUSBP1Q15486 140 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TMEM44Q2T9K0 475 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FAM153CQ494X1 144 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FAM9CQ8IZT9 166 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CNPY4Q8N129 248 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 OR2L13Q8N349 312 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 OR2M3Q8NG83 312 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EFHD2Q96C19 240 aaPredicted RBP11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DTNBP1Q96EV8 351 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 METTL2AQ96IZ6 378 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SFXN2Q96NB2 322 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EBPLQ9BY08 206 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GLIPR2Q9H4G4 154 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TNFRSF12AQ9NP84 129 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MYNNQ9NPC7 610 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FLRT3Q9NZU0 649 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DCDC2Q9UHG0 476 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PACSIN3Q9UKS6 424 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ABCG2Q9UNQ0 655 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DSCAMO60469 2012 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 RAI1Q7Z5J4 1906 aaPredicted RBP11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ZANQ9Y493 2812 aa11.07□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 IGLV3-32A0A0A0MS00 114 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPM1 405 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SH3D21A4FU49 640 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CCDC151A5D8V7 595 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GOLGA8RI6L899 631 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SIAH2O43255 324 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DIAPH2O60879 1101 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CGAP01215 116 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PEPDP12955 493 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PRPH2P23942 346 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 IL12BP29460 328 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MC3RP41968 323 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 KIR2DL2P43627 348 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SUCLG1P53597 346 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DNAJB13P59910 316 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 NAA20P61599 178 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MRPS22P82650 360 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 OCRLQ01968 901 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 BTKQ06187 659 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 C2orf80Q0P641 193 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GLYR1Q49A26 553 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ZNF474Q6S9Z5 364 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ZYG11AQ6WRX3 759 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 LUZP2Q86TE4 346 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CXorf67Q86X51 503 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GCNT2Q8N0V5 402 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ELP4Q96EB1 424 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ZNF764Q96H86 408 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 AMDHD1Q96NU7 426 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 LMF2Q9BU23 707 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DSN1Q9H410 356 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GSX1Q9H4S2 264 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MID1IP1Q9NPA3 183 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PFDN4Q9NQP4 134 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GIMAP4Q9NUV9 329 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 NTMQ9P121 344 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ZNF337Q9Y3M9 751 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TESMINQ9Y4I5 508 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ABCA2Q9BZC7 2435 aa11.06□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 H3BQF6 201 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 LINC01387J3KSC0 135 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 COQ9O75208 318 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TNFRSF21O75509 655 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 IL33O95760 270 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PROCP04070 461 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 JUNP05412 331 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 KRT20P35900 424 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 NCBP2P52298 156 aaKnown RBP eCLIP11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FAM27E3Q08E93 113 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GANABQ14697 944 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 VWA1Q6PCB0 445 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 APOOLQ6UXV4 268 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FRMD7Q6ZUT3 714 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 BTLAQ7Z6A9 289 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GRAMD2AQ8IUY3 354 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 WFDC11Q8NEX6 87 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CCDC126Q96EE4 140 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EGLN2Q96KS0 407 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MARK4Q96L34 752 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FCRL1Q96LA6 429 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 WFIKKN1Q96NZ8 548 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 BBS4Q96RK4 519 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms