RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 FOXF2Q12947 444 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 EFR3AQ14156 821 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 ARL13AQ5H913 290 aaPredicted RBP12.79□□□□□ -0.36
UPF3A-204ENST00000475218 ARSKQ6UWY0 536 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 ZCCHC23Q6ZST2 131 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 CDH24Q86UP0 819 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 OR14L1PQ8NHC6 308 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 CLHC1Q8NHS4 586 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 ZPLD1Q8TCW7 415 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 TSSK3Q96PN8 268 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 CCT7Q99832 543 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 TRMOQ9BU70 441 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 CALHM2Q9HA72 323 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 TAS2R10Q9NYW0 307 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 SENP1Q9P0U3 644 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 ZNF629Q9UEG4 869 aaPredicted RBP12.79□□□□□ -0.36
UPF3A-204ENST00000475218 MED12LQ86YW9 2145 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 GXYLT2A0PJZ3 443 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 TBX19O60806 448 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 IFI6P09912 130 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 NTSP30990 170 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 EVI2BP34910 448 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 CLDN15P56746 228 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 CYP27C1Q4G0S4 372 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 SH2D4BQ5SQS7 431 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 APOOLQ6UXV4 268 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 RIBC1Q8N443 379 aaPredicted RBP12.79□□□□□ -0.36
UPF3A-204ENST00000475218 OR2M3Q8NG83 312 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 NUDT8Q8WV74 236 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 GIMAP5Q96F15 307 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 C3orf30Q96M34 536 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 ZNF559Q9BR84 538 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 DDX18Q9NVP1 670 aaKnown RBP12.79□□□□□ -0.36
UPF3A-204ENST00000475218 JKAMPQ9P055 326 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 CLCF1Q9UBD9 225 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 CBLCQ9ULV8 474 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 MRPS18CQ9Y3D5 142 aaKnown RBP12.79□□□□□ -0.36
UPF3A-204ENST00000475218 OR10H1Q9Y4A9 318 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 FAM221AA4D161 298 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 PIP5K1BO14986 540 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 RGS14O43566 566 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 AKAP10O43572 662 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 SCO2O43819 266 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 NPHS1O60500 1241 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 IL33O95760 270 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 TCEA1P23193 301 aaKnown RBP12.78□□□□□ -0.36
UPF3A-204ENST00000475218 ASCL1P50553 236 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 RPL38P63173 70 aaKnown RBP12.78□□□□□ -0.36
UPF3A-204ENST00000475218 PSPHP78330 225 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 HSPB3Q12988 150 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 MYBPHQ13203 477 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 XKR7Q5GH72 579 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 EXOSC6Q5RKV6 272 aaKnown RBP12.78□□□□□ -0.36
UPF3A-204ENST00000475218 IFNEQ86WN2 208 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 TCP10LQ8TDR4 215 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 TWIST2Q8WVJ9 160 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 UCN2Q96RP3 112 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 REEP4Q9H6H4 257 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 CRIM1Q9NZV1 1036 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 NTMQ9P121 344 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 MID2Q9UJV3 735 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 ITGB1BP2Q9UKP3 347 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 TRAF6Q9Y4K3 522 aa12.78□□□□□ -0.36
UPF3A-204ENST00000475218 DVL2O14641 736 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 PDPK1O15530 556 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 TYROBPO43914 113 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 CTAG2O75638 210 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 IL2RAP01589 272 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 BCKDHAP12694 445 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 ZNF708P17019 499 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 EFNA1P20827 205 aaPredicted RBP12.77□□□□□ -0.36
UPF3A-204ENST00000475218 KRT20P35900 424 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 ETV4P43268 484 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 SRYQ05066 204 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 GABPB1Q06547 395 aaPredicted RBP12.77□□□□□ -0.36
UPF3A-204ENST00000475218 ZAR1Q86SH2 424 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 ZZZ3Q8IYH5 903 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 PIK3R3Q92569 461 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 RNASE6Q93091 150 aaKnown RBP12.77□□□□□ -0.36
UPF3A-204ENST00000475218 CAVIN3Q969G5 261 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 DSN1Q9H410 356 aa12.77□□□□□ -0.36
UPF3A-204ENST00000475218 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.77□□□□□ -0.36
UPF3A-204ENST00000475218 RPH3AQ9Y2J0 694 aaPredicted RBP12.77□□□□□ -0.36
UPF3A-204ENST00000475218 V9GYY5 206 aaPredicted RBP12.77□□□□□ -0.36
UPF3A-204ENST00000475218 AKAP6Q13023 2319 aa12.77□□□□□ -0.37
UPF3A-204ENST00000475218 CLCA1A8K7I4 914 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 NEFHP12036 1026 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 CTSSP25774 331 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 DPP4P27487 766 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 UQCRC1P31930 480 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 WDR93Q6P2C0 686 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 MARCH3Q86UD3 253 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 EXOC3L1Q86VI1 746 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 AGR3Q8TD06 166 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 KLHDC3Q9BQ90 382 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 EQTNQ9NQ60 294 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 SIRT3Q9NTG7 399 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-204ENST00000475218 MED11Q9P086 117 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 ZDHHC2Q9UIJ5 367 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms