RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CELF2-AS1Q8N7Q2 184 aa17.85■□□□□ 0.45
VIM-203ENST00000469543 PROKR2Q8NFJ6 384 aa17.85■□□□□ 0.45
VIM-203ENST00000469543 OR4Q3Q8NH05 313 aa17.85■□□□□ 0.45
VIM-203ENST00000469543 ACTRT3Q9BYD9 372 aa17.85■□□□□ 0.45
VIM-203ENST00000469543 ENKD1Q9H0I2 346 aa17.85■□□□□ 0.45
VIM-203ENST00000469543 ADAP2Q9NPF8 381 aa17.85■□□□□ 0.45
VIM-203ENST00000469543 ZSCAN32Q9NX65 697 aa17.85■□□□□ 0.45
VIM-203ENST00000469543 CSNK1G3Q9Y6M4 447 aa17.85■□□□□ 0.45
VIM-203ENST00000469543 CELA2BP08218 269 aaPredicted RBP17.84■□□□□ 0.45
VIM-203ENST00000469543 TEAD1P28347 426 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 RFX3P48380 749 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 TPTEP56180 551 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 ZNF45Q02386 682 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 SDE2Q6IQ49 451 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 ZC3H14Q6PJT7 736 aaKnown RBP17.84■□□□□ 0.45
VIM-203ENST00000469543 CCDC190Q86UF4 302 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 SCARF2Q96GP6 870 aaPredicted RBP17.84■□□□□ 0.45
VIM-203ENST00000469543 SARGQ9BW04 601 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 CLEC1BQ9P126 229 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 PEX16Q9Y5Y5 336 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 KDM1AO60341 852 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 MED26O95402 600 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 SMSP52788 366 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 MEDAGQ5VYS4 303 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 FCRL6Q6DN72 434 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 MFSD12Q6NUT3 480 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 FAM92BQ6ZTR7 304 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 ANKK1Q8NFD2 765 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 MCHR1Q99705 422 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 ANKHQ9HCJ1 492 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 EVA1BQ9NVM1 165 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 NDUFB11Q9NX14 153 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 FANCMQ8IYD8 2048 aa17.84■□□□□ 0.45
VIM-203ENST00000469543 FRYLO94915 3013 aa17.83■□□□□ 0.45
VIM-203ENST00000469543 ZC3H12DA2A288 527 aaKnown RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 PEX12O00623 359 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 CTHP32929 405 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 NKX2-5P52952 324 aaPredicted RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 RPS25P62851 125 aaKnown RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 PUS10Q3MIT2 529 aaKnown RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 TIMM50Q3ZCQ8 353 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 CCBE1Q6UXH8 406 aaPredicted RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 CD300LDQ6UXZ3 194 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 GDF7Q7Z4P5 450 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 OR8H2Q8N162 312 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 SRFBP1Q8NEF9 429 aaKnown RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 TEX47Q8TBZ9 253 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 SFXN5Q8TD22 340 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 C1GALT1C1Q96EU7 318 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 CEP19Q96LK0 163 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 GAS2L1Q99501 681 aaPredicted RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 GABRG3Q99928 467 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 TXNL4BQ9NX01 149 aaKnown RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 SLC7A7Q9UM01 511 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 CACNA1IQ9P0X4 2223 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 CASC3O15234 703 aaKnown RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 MSL3P1P0C860 447 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 UGT2B7P16662 529 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 TNFRSF4P43489 277 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 MTNR1AP48039 350 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 CEBPEQ15744 281 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 ZNF181Q2M3W8 571 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 TYW3Q6IPR3 259 aaKnown RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 LRRC25Q8N386 305 aaPredicted RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 NELL2Q99435 816 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 C1QTNF7Q9BXJ2 289 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 MARCH7Q9H992 704 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 KCNE5Q9UJ90 142 aa17.83■□□□□ 0.44
VIM-203ENST00000469543 DIMT1Q9UNQ2 313 aaKnown RBP17.83■□□□□ 0.44
VIM-203ENST00000469543 LRRC72A6NJI9 287 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 DVL2O14641 736 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 RAB36O95755 333 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 SLC35G6P0C7Q6 338 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 SELENBP1Q13228 472 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 EXOSC7Q15024 291 aaKnown RBP17.82■□□□□ 0.44
VIM-203ENST00000469543 BAK1Q16611 211 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 FAM214AQ32MH5 1076 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 ATAD3BQ5T9A4 648 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 FIGNL1Q6PIW4 674 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 SMARCD3Q6STE5 483 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 PLEKHM3Q6ZWE6 761 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 NLGN4YQ8NFZ3 816 aaPredicted RBP17.82■□□□□ 0.44
VIM-203ENST00000469543 ASB15Q8WXK1 588 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 FAM3CQ92520 227 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 ARHGDIGQ99819 225 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 SLC30A2Q9BRI3 323 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 TIGARQ9NQ88 270 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 DAPP1Q9UN19 280 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 STUB1Q9UNE7 303 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 WDR45Q9Y484 360 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 DMDP11532 3685 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 OR2W5A6NFC9 320 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 ALOX5P09917 674 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 SSTR4P31391 388 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 SDC2P34741 201 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 HSDL2Q6YN16 418 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 OR4K14Q8NGD5 310 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 TMEM163Q8TC26 289 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 GAL3ST3Q96A11 431 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 NACC2Q96BF6 587 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms