RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 WWTR1Q9GZV5 400 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 SDR39U1Q9NRG7 319 aaPredicted RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 RYDENQ9NUL5 291 aaKnown RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 PRODH2Q9UF12 536 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 ERVK-11Q9UQG0 969 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 CHD3Q12873 2000 aaKnown RBP10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 DNAJC13O75165 2243 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 C2orf92A0A1B0GVN3 265 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 A0A1W2PRB8 838 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 A8MVJ9 347 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 E9PBE3 544 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 WWP2O00308 870 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 COQ9O75208 318 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 TPOP07202 933 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 TROVE2P10155 538 aaKnown RBP eCLIP10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 EFNA1P20827 205 aaPredicted RBP10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 GPX3P22352 226 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 MC3RP41968 323 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 EMDP50402 254 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 CDK9P50750 372 aaKnown RBP10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 DLX5P56178 289 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 NME5P56597 212 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 UFM1P61960 85 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 RPS6KA2Q15349 733 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 PGS1Q32NB8 556 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 HLA-DQA1Q5Y7H0 255 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 OR4F3Q6IEY1 312 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ARSKQ6UWY0 536 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 PAMR1Q6UXH9 720 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 IL20RBQ6UXL0 311 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 OR2L13Q8N349 312 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ZNF441Q8N8Z8 693 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 C17orf47Q8NEP4 570 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 SLC22A8Q8TCC7 542 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ASB15Q8WXK1 588 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ADIPOR1Q96A54 375 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 TP53INP1Q96A56 240 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ELP4Q96EB1 424 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 TEX37Q96LM6 180 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ZNF317Q96PQ6 595 aaPredicted RBP10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 RASL10BQ96S79 203 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ZBTB18Q99592 522 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ITPAQ9BY32 194 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 TP63Q9H3D4 680 aaPredicted RBP10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ANKRA2Q9H9E1 313 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 DDX18Q9NVP1 670 aaKnown RBP10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 HPF1Q9NWY4 346 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 ZIM2Q9NZV7 527 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 DCTN4Q9UJW0 460 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 C19orf53Q9UNZ5 99 aaPredicted RBP10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 DTX4Q9Y2E6 619 aa10.92□□□□□ -0.66
SQSTM1-206ENST00000466342 A0A0G2JND7 137 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 A0A1B0GTH9 108 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 UPK1AO00322 258 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 RNASET2O00584 256 aaKnown RBP10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 TFECO14948 347 aaPredicted RBP10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 SLC22A3O75751 556 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 ATE1O95260 518 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 PSMG1O95456 288 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 IL12AP29459 219 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 SOX3P41225 446 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 MRPL19P49406 292 aaKnown RBP10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 WNT3P56703 355 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 IRX1P78414 480 aaPredicted RBP10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 PPP2R2BQ00005 443 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 PMPCAQ10713 525 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 KEAP1Q14145 624 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 FAM174BQ3ZCQ3 159 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 PIGGQ5H8A4 983 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 SPANXN4Q5MJ08 99 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 CGB2Q6NT52 195 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 OPN5Q6U736 354 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 KRTAP1-3Q8IUG1 177 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 MIER2Q8N344 545 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 SLC15A4Q8N697 577 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 GLB1L3Q8NCI6 653 aaPredicted RBP10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 PSD4Q8NDX1 1056 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 PSMA8Q8TAA3 256 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 OR5P2Q8WZ92 322 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 SGCZQ96LD1 299 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 NEUROD4Q9HD90 331 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 SIRT3Q9NTG7 399 aaPredicted RBP10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 TAS2R9Q9NYW1 312 aa10.91□□□□□ -0.66
SQSTM1-206ENST00000466342 HIVEP2P31629 2446 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 ZNF354AO60765 605 aaPredicted RBP10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 SCN2BO60939 215 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 OR6B1O95007 311 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 C6orf47O95873 294 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 CNR1P21554 472 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 S100A3P33764 101 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 KIR2DL3P43628 341 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 ATP4BP51164 291 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 NR0B1P51843 470 aaKnown RBP10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 NUP107P57740 925 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 GPR85P60893 370 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 STX1BP61266 288 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 DCAF7P61962 342 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 PHC1P78364 1004 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 ANXA8L1Q5VT79 327 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 SHEQ5VZ18 495 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms