RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 AMD1P17707 334 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 RBMS1P29558 406 aaKnown RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 NF2P35240 595 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 TNFSF9P41273 254 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SLC1A3P43003 542 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SLCO1A2P46721 670 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 MYL6P60660 151 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 TRA2BP62995 288 aaKnown RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 HERV-K104P63124 156 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 IRX3P78415 501 aaPredicted RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 TFAMQ00059 246 aaKnown RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 PDZK1IP1Q13113 114 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 DRP2Q13474 957 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 RAPSNQ13702 412 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 CEACAM7Q14002 265 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 VGLL4Q14135 290 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SPHARQ15513 63 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SLC25A24Q6NUK1 477 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 ADAM5Q6NVV9 412 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SLC27A4Q6P1M0 643 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 KDELC1Q6UW63 502 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 C5orf24Q7Z6I8 188 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 CROCCP2Q86T23 111 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 AMZ2Q86W34 360 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 PHF13Q86YI8 300 aaPredicted RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 WDR49Q8IV35 697 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 ZBTB8OSQ8IWT0 167 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 RNF148Q8N7C7 305 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 ZNF383Q8NA42 475 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 FAM71CQ8NEG0 241 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 OR56B1Q8NGI3 324 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 FBXO30Q8TB52 745 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SELENOMQ8WWX9 145 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SORCS1Q8WY21 1168 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 THRSPQ92748 146 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 TLCD1Q96CP7 247 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SCRN2Q96FV2 425 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 GPR137Q96N19 417 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 ZNF583Q96ND8 569 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 PGLYRP2Q96PD5 576 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 XPO6Q96QU8 1125 aaKnown RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 TAAR6Q96RI8 345 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 FTHL17Q9BXU8 183 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 NACA2Q9H009 215 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SIRPDQ9H106 197 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 CDC42EP4Q9H3Q1 356 aaKnown RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 MRPL47Q9HD33 250 aaKnown RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 PALMDQ9NP74 551 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 DDX28Q9NUL7 540 aaKnown RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 ACOXLQ9NUZ1 547 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 MRPS2Q9Y399 296 aaKnown RBP3.66□□□□□ -1.82
VPS29-202ENST00000447578 ETV7Q9Y603 341 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 SSC5DA1L4H1 1573 aa3.65□□□□□ -1.82
VPS29-202ENST00000447578 A0A087WZY1 265 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 A8MVM7 634 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 SNURFLB1AK76 121 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ZNF732B4DXR9 585 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 C16orf97H3BN30 126 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 CHEK1O14757 476 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 FPGTO14772 594 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 GLRA3O75311 464 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 TOM1L1O75674 476 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 CNMDO75829 334 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 CDK2AP2O75956 126 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 DFFBO76075 338 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ASS1P00966 412 aaKnown RBP3.65□□□□□ -1.83
VPS29-202ENST00000447578 AGTP01019 485 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 TNNC2P02585 160 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 CALB1P05937 261 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 PAEPP09466 180 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 GNSP15586 552 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 HLA-FP30511 346 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 MAGEA11P43364 429 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 NUMBP49757 651 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 TNFSF10P50591 281 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 AP3M2P53677 418 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 OSTNP61366 133 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 PMP22Q01453 160 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 CAV1Q03135 178 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ELP6Q0PNE2 266 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 LAMTOR4Q0VGL1 99 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 IFT88Q13099 833 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ITGA9Q13797 1035 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 TFDP1Q14186 410 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 MAPK6Q16659 721 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 SGSM1Q2NKQ1 1148 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ZNF699Q32M78 642 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 PDLIM3Q53GG5 364 aaPredicted RBP3.65□□□□□ -1.83
VPS29-202ENST00000447578 SLC25A53Q5H9E4 307 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 FGD3Q5JSP0 725 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ATF7IP2Q5U623 682 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 OR4C11Q6IEV9 310 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 PPP1R2P3Q6NXS1 205 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 DNAJC24Q6P3W2 148 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 METTL7BQ6UX53 244 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 SCARA5Q6ZMJ2 495 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 C17orf107Q6ZR85 190 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 TRMT10CQ7L0Y3 403 aaKnown RBP3.65□□□□□ -1.83
VPS29-202ENST00000447578 ADGRD2Q7Z7M1 963 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 FBXO16Q8IX29 292 aaPredicted RBP3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms