RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 SLC38A1Q9H2H9 487 aa15.36■□□□□ 0.05
CLCNKA-203ENST00000439316 ANKRD19PQ9H560 264 aa15.36■□□□□ 0.05
CLCNKA-203ENST00000439316 PPP1R3EQ9H7J1 279 aa15.36■□□□□ 0.05
CLCNKA-203ENST00000439316 RANGRFQ9HD47 186 aaPredicted RBP15.36■□□□□ 0.05
CLCNKA-203ENST00000439316 SEMA4GQ9NTN9 838 aa15.36■□□□□ 0.05
CLCNKA-203ENST00000439316 CNIH4Q9P003 139 aa15.36■□□□□ 0.05
CLCNKA-203ENST00000439316 LIPT1Q9Y234 373 aa15.36■□□□□ 0.05
CLCNKA-203ENST00000439316 PGRMC2O15173 223 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 LALBAP00709 142 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ALPPL2P10696 532 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 HLA-DMAP28067 261 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 CDH11P55287 796 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 CAV3P56539 151 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 RACK1P63244 317 aaKnown RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 QPRTQ15274 297 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 MLF2Q15773 248 aaPredicted RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 TMEM44Q2T9K0 475 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ZNF750Q32MQ0 723 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ZNF311Q5JNZ3 666 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 AADACL4Q5VUY2 407 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 TYW3Q6IPR3 259 aaKnown RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 TMEM107Q6UX40 140 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 NOXA1Q86UR1 476 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ZFP41Q8N8Y5 198 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ENKURQ8TC29 256 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 MS4A6EQ96DS6 147 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ZC3HAV1LQ96H79 300 aaKnown RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 FAM46AQ96IP4 442 aaKnown RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 OR7D2Q96RA2 312 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 FERD3LQ96RJ6 166 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 TMEM246Q9BRR3 403 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 GPR55Q9Y2T6 319 aaPredicted RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 C1QTNF3-AMACRE9PGA6 284 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 CASKO14936 926 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 AIFM1O95831 613 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 STATHP02808 62 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 CSF2P04141 144 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 YES1P07947 543 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 HIST1H1TP22492 207 aaPredicted RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 APEX1P27695 318 aaKnown RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 WASP42768 502 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 MAP2K3P46734 347 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 RAB28P51157 221 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ACSM1Q08AH1 577 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ST3GAL3Q11203 375 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ZNF155Q12901 538 aaPredicted RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 WSCD2Q2TBF2 565 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 PIP5KL1Q5T9C9 394 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 THOC7Q6I9Y2 204 aaKnown RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 CNIH2Q6PI25 160 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 METAP1DQ6UB28 335 aaPredicted RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 NUDT18Q6ZVK8 323 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 OR4Q3Q8NH05 313 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 OR8K5Q8NH50 307 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 PIGXQ8TBF5 258 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 RFKQ969G6 155 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 DCLRE1CQ96SD1 692 aaKnown RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 INSM2Q96T92 566 aaPredicted RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ATF6BQ99941 703 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ZNF649Q9BS31 505 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 POLMQ9NP87 494 aaPredicted RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 PRSS16Q9NQE7 514 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 PRDM7Q9NQW5 492 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 PAQR5Q9NXK6 330 aaPredicted RBP15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ACSL5Q9ULC5 683 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 CLCA2Q9UQC9 943 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ENTPD4Q9Y227 616 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 CHST2Q9Y4C5 530 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 ATG4BQ9Y4P1 393 aa15.35■□□□□ 0.05
CLCNKA-203ENST00000439316 CPSF4LA6NMK7 179 aaKnown RBP15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 SOX1O00570 391 aaPredicted RBP15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 SURF4O15260 269 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 ERI3O43414 337 aaKnown RBP15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 FRS3O43559 492 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 NTN1O95631 604 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 ACP5P13686 325 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 FPR3P25089 353 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 PTBP1P26599 531 aaKnown RBP eCLIP15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 PKLRP30613 574 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 RGS19P49795 217 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 CHRNEQ04844 493 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 DMPKQ09013 629 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 RIN1Q13671 783 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 CLEC12AQ5QGZ9 265 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 ABHD17CQ6PCB6 329 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 LHFPL3Q86UP9 236 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 VRK2Q86Y07 508 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 CCDC116Q8IYX3 515 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 ACOT4Q8N9L9 421 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 C12orf66Q96MD2 445 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 FYTTD1Q96QD9 318 aaKnown RBP15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 GAS2L1Q99501 681 aaPredicted RBP15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 BTBD1Q9H0C5 482 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 XKR8Q9H6D3 395 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 SLA2Q9H6Q3 261 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 SYNDIG1Q9H7V2 258 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 PLSCR3Q9NRY6 295 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 COMMD3Q9UBI1 195 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 SLC13A4Q9UKG4 626 aa15.34■□□□□ 0.05
CLCNKA-203ENST00000439316 CES1P1Q9UKY3 287 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms