RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 FAM25AB3EWG3 89 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 FAM25CB3EWG5 89 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 FAM25GB3EWG6 89 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 PGRMC2O15173 223 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 SURF4O15260 269 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 PPM1DO15297 605 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 PLA2G10O15496 165 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 PRKAR1AP10644 381 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 SLC2A2P11168 524 aaPredicted RBP10.59□□□□□ -0.71
USP4-205ENST00000431357 F3P13726 295 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 CTNNB1P35222 781 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 BCL6P41182 706 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 MAP2K3P46734 347 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 B2MP61769 119 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 CEBPEQ15744 281 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 GAB4Q2WGN9 574 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 PLET1Q6UQ28 207 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 TMEM107Q6UX40 140 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 OLIG3Q7RTU3 272 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 NUP43Q8NFH3 380 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 OR8K5Q8NH50 307 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 SPPL3Q8TCT6 385 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 SMG7Q92540 1137 aaKnown RBP10.59□□□□□ -0.71
USP4-205ENST00000431357 RSPRY1Q96DX4 576 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 C16orf58Q96GQ5 468 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 TM9SF2Q99805 663 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 GDF15Q99988 308 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 UQCC2Q9BRT2 126 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 RERGLQ9H628 205 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 PPP1R3EQ9H7J1 279 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 KRCC1Q9NPI7 259 aaPredicted RBP10.59□□□□□ -0.71
USP4-205ENST00000431357 LYARQ9NX58 379 aaKnown RBP10.59□□□□□ -0.71
USP4-205ENST00000431357 PHF11Q9UIL8 331 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 GPR52Q9Y2T5 361 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 ATG4BQ9Y4P1 393 aa10.59□□□□□ -0.71
USP4-205ENST00000431357 GLOD5A6NK44 160 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 DUXAA6NLW8 204 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 SLC19A2O60779 497 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 OR5F1O95221 314 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 AIFM1O95831 613 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 AGR2O95994 175 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 IGHA1P01876 353 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 CHRM5P08912 532 aaPredicted RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 ACP5P13686 325 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 HTR1FP30939 366 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 KIR2DL3P43628 341 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 P2RX3P56373 397 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 KRT33BQ14525 404 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 MLF2Q15773 248 aaPredicted RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 TIGD3Q6B0B8 471 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 IDO2Q6ZQW0 420 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 ARIH2OSQ8N7S6 290 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 DUSP18Q8NEJ0 188 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 ATP6V1C2Q8NEY4 427 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 ACOT12Q8WYK0 555 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 TRIM43Q96BQ3 446 aaPredicted RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 ZNF707Q96C28 371 aaPredicted RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 ELP4Q96EB1 424 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 FAM46AQ96IP4 442 aaKnown RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 DMRTB1Q96MA1 342 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 RIPOR3Q96MK2 946 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 ATF6BQ99941 703 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 ACTRT3Q9BYD9 372 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 WDR26Q9H7D7 661 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 CACYBPQ9HB71 228 aaKnown RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 IL23AQ9NPF7 189 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 PRSS16Q9NQE7 514 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 RBFOX1Q9NWB1 397 aaKnown RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 STMN3Q9NZ72 180 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 NLGN3Q9NZ94 848 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 H2AFY2Q9P0M6 372 aaPredicted RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 COMMD3Q9UBI1 195 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 NUFIP1Q9UHK0 495 aaKnown RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 KLHL21Q9UJP4 597 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 ZNF780BQ9Y6R6 833 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 TCF20Q9UGU0 1960 aaKnown RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 CPSF4LA6NMK7 179 aaKnown RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 WASHC1A8K0Z3 465 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 PRKRAO75569 313 aaKnown RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 APOL3O95236 402 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 TRIM23P36406 574 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 VIPR2P41587 438 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 EVX1P49640 407 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 BDH1Q02338 343 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.58□□□□□ -0.72
USP4-205ENST00000431357 PGGHGQ32M88 737 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 CNIH2Q6PI25 160 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 WASH2PQ6VEQ5 465 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 PLEKHM3Q6ZWE6 761 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 MBOAT2Q6ZWT7 520 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 C16orf62Q7Z3J2 963 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 LHFPL3Q86UP9 236 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 VRK2Q86Y07 508 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 MARCH9Q86YJ5 346 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 LIX1LQ8IVB5 337 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 TCTE3Q8IZS6 198 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 Q8N402 240 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 SYT14Q8NB59 555 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 GRPEL2Q8TAA5 225 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 RNF170Q96K19 258 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms