RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 K7ENP7 123 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 KCNK2O95069 426 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 IL33O95760 270 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 CT45A8P0DMV1 189 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 CT45A9P0DMV2 189 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 ARAFP10398 606 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 IL7RP16871 459 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 ABCD3P28288 659 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 CYB561P49447 251 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 SOX8P57073 446 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 MLF1P58340 268 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 CXADRP78310 365 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 SELPLGQ14242 412 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 GPR68Q15743 365 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 CT45A2Q5DJT8 189 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 MTX3Q5HYI7 312 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 ACER2Q5QJU3 275 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 ATP1A1-AS1Q5TC04 95 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 GLYATQ6IB77 296 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 INO80CQ6PI98 192 aaPredicted RBP9.33□□□□□ -0.92
CD44-207ENST00000425428 FIGNL1Q6PIW4 674 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 NUP54Q7Z3B4 507 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 NET1Q7Z628 596 aaPredicted RBP9.33□□□□□ -0.92
CD44-207ENST00000425428 DHFR2Q86XF0 187 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 BCORP1Q8N888 145 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 CHDHQ8NE62 594 aaPredicted RBP9.33□□□□□ -0.92
CD44-207ENST00000425428 FBXO27Q8NI29 283 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 SLC38A5Q8WUX1 472 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 DIO2Q92813 273 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 TMBIM1Q969X1 311 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 CCDC124Q96CT7 223 aaKnown RBP9.33□□□□□ -0.92
CD44-207ENST00000425428 OTUB1Q96FW1 271 aaPredicted RBP9.33□□□□□ -0.92
CD44-207ENST00000425428 TMEM19Q96HH6 336 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 SGCZQ96LD1 299 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 RNF145Q96MT1 663 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 ZNF583Q96ND8 569 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 LMF1Q96S06 567 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 SDF2Q99470 211 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 TBL1XR1Q9BZK7 514 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 TRIM4Q9C037 500 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 ZBTB20Q9HC78 741 aaPredicted RBP9.33□□□□□ -0.92
CD44-207ENST00000425428 SUCOQ9UBS9 1254 aaKnown RBP9.33□□□□□ -0.92
CD44-207ENST00000425428 SEC14L3Q9UDX4 400 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 SNX13Q9Y5W8 968 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 APC2O95996 2303 aa9.33□□□□□ -0.92
CD44-207ENST00000425428 A0A087WV48 116 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 OR6C70A6NIJ9 312 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 CXCR6O00574 342 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 TNFRSF21O75509 655 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 PPM1BO75688 479 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 H6PDO95479 791 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 CLPSP04118 112 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 GUSBP08236 651 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 TFPTP0C1Z6 253 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ETS2P15036 469 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 HOXB6P17509 224 aaKnown RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 MAN2A2P49641 1150 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ARG2P78540 354 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 TRAP1Q12931 704 aaKnown RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 DUSP8Q13202 625 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 SRSF6Q13247 344 aaKnown RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 TRIM25Q14258 630 aaKnown RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.32□□□□□ -0.92
CD44-207ENST00000425428 EIPR1Q53HC9 387 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 C1orf146Q5VVC0 180 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 HEPHL1Q6MZM0 1159 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 H3F3CQ6NXT2 135 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ULK2Q8IYT8 1036 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ZNF619Q8N2I2 560 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ZNF614Q8N883 585 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 SIMC1Q8NDZ2 872 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 TTC9Q92623 222 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 HOXB13Q92826 284 aaPredicted RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 ASB9Q96DX5 294 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 NSMCE2Q96MF7 247 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 RASL10BQ96S79 203 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ADOQ96SZ5 270 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 CADM1Q9BY67 442 aaKnown RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 TRIM8Q9BZR9 551 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 IKZF5Q9H5V7 419 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 METTL7AQ9H8H3 244 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 TIMMDC1Q9NPL8 285 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 UBQLN4Q9NRR5 601 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 SAMD4AQ9UPU9 718 aaKnown RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 DTX4Q9Y2E6 619 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 KCNMB2Q9Y691 235 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 NINQ8N4C6 2090 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 GXYLT2A0PJZ3 443 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 H0YHG0 523 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 PDE5AO76074 875 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 PGM3O95394 542 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 P04436 131 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 DBIP07108 87 aaKnown RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 CELA2AP08217 269 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 UQCRBP14927 111 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 IFNA8P32881 189 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 SOX11P35716 441 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 MVDP53602 400 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 POLE2P56282 527 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ELOAQ14241 798 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms