RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SYNDIG1LA6NDD5 238 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 CD8B2A6NJW9 211 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 B4DXG7 233 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 H7C1Q1 480 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 PIP5K1BO14986 540 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 SMAD7O15105 426 aaKnown RBP11.73□□□□□ -0.53
LINC00339-202ENST00000416769 RGS14O43566 566 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 LINC00032P0C843 101 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 TMIGD3P0DMS9 266 aaPredicted RBP11.73□□□□□ -0.53
LINC00339-202ENST00000416769 PRPH2P23942 346 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 DUSP2Q05923 314 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 Q5PR19 223 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 FAM180BQ6P0A1 224 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 ANGPTL8Q6UXH0 198 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 DDIASQ8IXT1 998 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 ZCCHC7Q8N3Z6 543 aaKnown RBP11.73□□□□□ -0.53
LINC00339-202ENST00000416769 ZNF615Q8N8J6 731 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 TANKQ92844 425 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 ABTB1Q969K4 478 aaPredicted RBP11.73□□□□□ -0.53
LINC00339-202ENST00000416769 RGMAQ96B86 450 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 INTS12Q96CB8 462 aaKnown RBP11.73□□□□□ -0.53
LINC00339-202ENST00000416769 ART5Q96L15 291 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 SIKE1Q9BRV8 207 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 CENPKQ9BS16 269 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 RBM24Q9BX46 236 aaKnown RBP11.73□□□□□ -0.53
LINC00339-202ENST00000416769 NXF5Q9H1B4 397 aaKnown RBP11.73□□□□□ -0.53
LINC00339-202ENST00000416769 MEAF6Q9HAF1 191 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 CXorf21Q9HAI6 301 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 NEUROD4Q9HD90 331 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 SERHLQ9NQF3 203 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 FGFR1OP2Q9NVK5 253 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 MARCOQ9UEW3 520 aaPredicted RBP11.73□□□□□ -0.53
LINC00339-202ENST00000416769 PHF11Q9UIL8 331 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 MAPRE3Q9UPY8 281 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 CCL27Q9Y4X3 112 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 USH1CQ9Y6N9 552 aa11.73□□□□□ -0.53
LINC00339-202ENST00000416769 HIVEP2P31629 2446 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 SH3D21A4FU49 640 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 TRIM64A6NGJ6 449 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 TRIM64BA6NI03 449 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 SKAP2O75563 359 aaPredicted RBP11.72□□□□□ -0.53
LINC00339-202ENST00000416769 RSL1D1O76021 490 aaKnown RBP11.72□□□□□ -0.53
LINC00339-202ENST00000416769 SEMA3DO95025 777 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 HEXAP06865 529 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 FAM58BPP0C7Q3 252 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 TROVE2P10155 538 aaKnown RBP eCLIP11.72□□□□□ -0.53
LINC00339-202ENST00000416769 GPX3P22352 226 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 EXOSC7Q15024 291 aaKnown RBP11.72□□□□□ -0.53
LINC00339-202ENST00000416769 PDCD2Q16342 344 aaPredicted RBP11.72□□□□□ -0.53
LINC00339-202ENST00000416769 IMPG1Q17R60 797 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 SMU1Q2TAY7 513 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 XKR7Q5GH72 579 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 NHSL2Q5HYW2 709 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 FAM111BQ6SJ93 734 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 EPGNQ6UW88 154 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 METTL4Q8N3J2 472 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 STON2Q8WXE9 905 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 HGDQ93099 445 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 C3orf30Q96M34 536 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 NUF2Q9BZD4 464 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 ACPTQ9BZG2 426 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 SIRT5Q9NXA8 310 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 SLC12A4Q9UP95 1085 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 DSCAMO60469 2012 aa11.72□□□□□ -0.53
LINC00339-202ENST00000416769 PCNX3Q9H6A9 2034 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 COL6A5A8TX70 2615 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 DYRK3O43781 588 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 SHOX2O60902 331 aaPredicted RBP11.71□□□□□ -0.53
LINC00339-202ENST00000416769 JUNP05412 331 aaKnown RBP11.71□□□□□ -0.53
LINC00339-202ENST00000416769 ABCB1P08183 1280 aaPredicted RBP11.71□□□□□ -0.53
LINC00339-202ENST00000416769 SLC35E2P0CK97 266 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 S1PR1P21453 382 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 ABCD3P28288 659 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 PEX19P40855 299 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 BUD31P41223 144 aaPredicted RBP11.71□□□□□ -0.53
LINC00339-202ENST00000416769 SEC24CP53992 1094 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 SORDQ00796 357 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 HMGCS1Q01581 520 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 FUT7Q11130 342 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 TBL3Q12788 808 aaKnown RBP11.71□□□□□ -0.53
LINC00339-202ENST00000416769 KIAA0040Q15053 153 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 TIGD3Q6B0B8 471 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 PACS2Q86VP3 889 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 KIF18BQ86Y91 864 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 GALNT12Q8IXK2 581 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 TAGAPQ8N103 731 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 WDSUB1Q8N9V3 476 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 OR2T11Q8NH01 316 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 TMEM41AQ96HV5 264 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 MAELQ96JY0 434 aaKnown RBP11.71□□□□□ -0.53
LINC00339-202ENST00000416769 COX4I2Q96KJ9 171 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 PPP3R2Q96LZ3 170 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 Q96MF0 132 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 HBEGFQ99075 208 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 ITPAQ9BY32 194 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 OR10A5Q9H207 317 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 DDX31Q9H8H2 851 aaKnown RBP11.71□□□□□ -0.53
LINC00339-202ENST00000416769 ANKRA2Q9H9E1 313 aa11.71□□□□□ -0.53
LINC00339-202ENST00000416769 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.71□□□□□ -0.53
LINC00339-202ENST00000416769 C1orf109Q9NX04 203 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms