RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 SOX8P57073 446 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 CHRNEQ04844 493 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 DMTNQ08495 405 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 AIMP2Q13155 320 aaKnown RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 KPNB1Q14974 876 aaKnown RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 DECR1Q16698 335 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 TYW3Q6IPR3 259 aaKnown RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 FRRS1Q6ZNA5 592 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 KRT73Q86Y46 540 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 SPPL2CQ8IUH8 684 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 C10orf67Q8IYJ2 551 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 TAGAPQ8N103 731 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 SLC34A3Q8N130 599 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 BHLHE22Q8NFJ8 381 aaPredicted RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 DIO2Q92813 273 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 GATA6Q92908 595 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 FAM162AQ96A26 154 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 DUS3LQ96G46 650 aaKnown RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 RMND5BQ96G75 393 aaPredicted RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 LRGUKQ96M69 825 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 RNF145Q96MT1 663 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 CCNL2Q96S94 520 aaPredicted RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 ZNF607Q96SK3 696 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 SPATA5L1Q9BVQ7 753 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 ATP13A2Q9NQ11 1180 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 RRP15Q9Y3B9 282 aaKnown RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 WDR45Q9Y484 360 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 GPC6Q9Y625 555 aaPredicted RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 PCSK5Q92824 1860 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 CDC14CA4D256 554 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 TMEM229AB2RXF0 380 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 NPIPB9F8W1W9 429 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 NKX2-8O15522 239 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 EFSO43281 561 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 KIAA0513O60268 411 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 TSPAN2O60636 221 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 SERPINB7O75635 380 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 MFN2O95140 757 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 NADKO95544 446 aaPredicted RBP13.15□□□□□ -0.3
SF3B1-204ENST00000414963 C8BP07358 591 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 ITGAMP11215 1152 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 ABCD3P28288 659 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 PSMD4P55036 377 aaKnown RBP13.15□□□□□ -0.3
SF3B1-204ENST00000414963 NRG3P56975 720 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 ELF3P78545 371 aaPredicted RBP13.15□□□□□ -0.3
SF3B1-204ENST00000414963 HPCAP84074 193 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 RHDQ02161 417 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 SRSF6Q13247 344 aaKnown RBP13.15□□□□□ -0.3
SF3B1-204ENST00000414963 RPS26P11Q5JNZ5 115 aaPredicted RBP13.15□□□□□ -0.3
SF3B1-204ENST00000414963 CCNJQ5T5M9 372 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 TCTN3Q6NUS6 607 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 FIGNL1Q6PIW4 674 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 CYP2R1Q6VVX0 501 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 CBLL1Q75N03 491 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 EIF3MQ7L2H7 374 aaKnown RBP13.15□□□□□ -0.3
SF3B1-204ENST00000414963 ZNF619Q8N2I2 560 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 TMEM102Q8N9M5 508 aaPredicted RBP13.15□□□□□ -0.3
SF3B1-204ENST00000414963 PSMF1Q92530 271 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 TMBIM1Q969X1 311 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 TAMM41Q96BW9 452 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 HOXD1Q9GZZ0 328 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 CCDC86Q9H6F5 360 aaKnown RBP13.15□□□□□ -0.3
SF3B1-204ENST00000414963 FBXO34Q9NWN3 711 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 RPS6KA6Q9UK32 745 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 PCDHGA10Q9Y5H3 936 aa13.15□□□□□ -0.3
SF3B1-204ENST00000414963 OR6C70A6NIJ9 312 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 AGAP5A6NIR3 686 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 CDK2AP1O14519 115 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 KLK10O43240 276 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 SERPINA1P01009 418 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 UMPSP11172 480 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 HOXB6P17509 224 aaKnown RBP13.14□□□□□ -0.31
SF3B1-204ENST00000414963 ATP6V1C1P21283 382 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 RPS4Y1P22090 263 aaKnown RBP13.14□□□□□ -0.31
SF3B1-204ENST00000414963 AQP1P29972 269 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 PNLIPRP2P54317 469 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 RRADP55042 308 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 MLF1P58340 268 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 ZNF141Q15928 474 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 NNATQ16517 81 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 CYBRD1Q53TN4 286 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 LYPD8Q6UX82 237 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 OLIG3Q7RTU3 272 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 ZAR1Q86SH2 424 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 RPS19BP1Q86WX3 136 aaKnown RBP13.14□□□□□ -0.31
SF3B1-204ENST00000414963 SLC5A8Q8N695 610 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 SLC22A8Q8TCC7 542 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 SPPL2AQ8TCT8 520 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 RASSF5Q8WWW0 418 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 ZG16BQ96DA0 208 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 COL21A1Q96P44 957 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 ADPRHL2Q9NX46 363 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 ANGPTL2Q9UKU9 493 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 MKLN1Q9UL63 735 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 SAMD4AQ9UPU9 718 aaKnown RBP13.14□□□□□ -0.31
SF3B1-204ENST00000414963 YARS2Q9Y2Z4 477 aaKnown RBP13.14□□□□□ -0.31
SF3B1-204ENST00000414963 IFT52Q9Y366 437 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 NPFFR2Q9Y5X5 522 aa13.14□□□□□ -0.31
SF3B1-204ENST00000414963 A8MUI8 341 aa13.13□□□□□ -0.31
SF3B1-204ENST00000414963 WWP2O00308 870 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms