RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 LSM1O15116 133 aaKnown RBP17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 SCO2O43819 266 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 ZIC3O60481 467 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 CREB1P16220 341 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 EVI2BP34910 448 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 GCKP35557 465 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 IFFO1Q0D2I5 559 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 UGT3A2Q3SY77 523 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 GALNTL6Q49A17 601 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 CES4AQ5XG92 561 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 RNF165Q6ZSG1 346 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 ZCCHC23Q6ZST2 131 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 TMEM200AQ86VY9 491 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 MBD3L2Q8NHZ7 208 aaPredicted RBP17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 TCP10LQ8TDR4 215 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 CCT7Q99832 543 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 G6PC3Q9BUM1 346 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 RPH3AQ9Y2J0 694 aaPredicted RBP17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 PDPK1O15530 556 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 FADS1O60427 444 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 CHEK2O96017 543 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 FGF4P08620 206 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 NEFHP12036 1026 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 ARRB2P32121 409 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 LHX2P50458 406 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 MRPS22P82650 360 aaKnown RBP17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 RCAN2Q14206 197 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 ENPP6Q6UWR7 440 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 DDIASQ8IXT1 998 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 ZZZ3Q8IYH5 903 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 AGR3Q8TD06 166 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 TWIST2Q8WVJ9 160 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 LMF2Q9BU23 707 aaKnown RBP17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 REEP4Q9H6H4 257 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 EQTNQ9NQ60 294 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 GIMAP2Q9UG22 337 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 DKKL1Q9UK85 242 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 TRAF6Q9Y4K3 522 aa17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 V9GYY5 206 aaPredicted RBP17.5■□□□□ 0.39
SMARCB1-204ENST00000407422 NUP214P35658 2090 aaPredicted RBP17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 H0Y3Z8 333 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 PIP5K1BO14986 540 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 NPHS1O60500 1241 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 DPP4P27487 766 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 RFX3P48380 749 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 ASCL1P50553 236 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 DECR1Q16698 335 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 NRGNQ92686 78 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 PPCDCQ96CD2 204 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 SFXN2Q96NB2 322 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 SLC24A3Q9HC58 644 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 Q9N2J8 555 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 SH3BP4Q9P0V3 963 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 PPP4R1LQ9P1A2 415 aa17.49■□□□□ 0.39
SMARCB1-204ENST00000407422 GXYLT2A0PJZ3 443 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 ZWINTO95229 277 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 CTSSP25774 331 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 GABRA3P34903 492 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 KIR2DL3P43628 341 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 CLDN18P56856 261 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 B3GALT5-AS1P59052 145 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 FOXF2Q12947 444 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 STX5Q13190 355 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 PDE7AQ13946 482 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 ZNHIT3Q15649 155 aaPredicted RBP17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 FBXL19-AS1Q494R0 122 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 ADGRE4PQ86SQ3 457 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 FADS6Q8N9I5 356 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 OR4K17Q8NGC6 315 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 PIK3R3Q92569 461 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 RNASE6Q93091 150 aaKnown RBP17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 ZNF764Q96H86 408 aaPredicted RBP17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 ROPN1BQ9BZX4 212 aaPredicted RBP17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 DSN1Q9H410 356 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 ROPN1Q9HAT0 212 aaPredicted RBP17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 CRIM1Q9NZV1 1036 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 MED11Q9P086 117 aa17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 MRPS18CQ9Y3D5 142 aaKnown RBP17.48■□□□□ 0.39
SMARCB1-204ENST00000407422 CLCA1A8K7I4 914 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 IL33O95760 270 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 IGKV1D-16P01601 117 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 BCKDHAP12694 445 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 EFNA1P20827 205 aaPredicted RBP17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 GPC1P35052 558 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 DGKQP52824 942 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 EMBQ6PCB8 327 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 AAGABQ6PD74 315 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 MARCH3Q86UD3 253 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 OR2M3Q8NG83 312 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 TMED5Q9Y3A6 229 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 ABCA4P78363 2273 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 TBX19O60806 448 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 IFI6P09912 130 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 TMIGD3P0DMS9 266 aaPredicted RBP17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 PRPS2P11908 318 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 FRKP42685 505 aaPredicted RBP17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 PRKAG1P54619 331 aa17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 MANFP55145 182 aaKnown RBP17.47■□□□□ 0.39
SMARCB1-204ENST00000407422 DSCR4P56555 118 aaPredicted RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms