RNA–Protein interactions for RNA: ENST00000397004.8

NUP98-204, Transcript of nucleoporin 98, humanhuman

TSL 1 (best) BASIC

Gene NUP98, Length 3,923 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-204ENST00000397004 RB1P06400 928 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 CDH11P55287 796 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 CLDN2P57739 230 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 CSTF1Q05048 431 aaKnown RBP13.04□□□□□ -0.32
NUP98-204ENST00000397004 NXPE3Q969Y0 559 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 MED30Q96HR3 178 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 SLC35G5Q96KT7 338 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 ART5Q96L15 291 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 HINT3Q9NQE9 182 aaKnown RBP13.04□□□□□ -0.32
NUP98-204ENST00000397004 MYO10Q9HD67 2058 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 NARSO43776 548 aaKnown RBP13.04□□□□□ -0.32
NUP98-204ENST00000397004 PDE9AO76083 593 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 IL12RB1P42701 662 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 FAM109AQ8N4B1 249 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 SETD7Q8WTS6 366 aaKnown RBP13.04□□□□□ -0.32
NUP98-204ENST00000397004 NARFLQ9H6Q4 476 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 MAT2BQ9NZL9 334 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 INMT-MINDY4F8WBC2 141 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 CACNB4O00305 520 aaPredicted RBP13.04□□□□□ -0.32
NUP98-204ENST00000397004 MAN2B1O00754 1011 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 C6P13671 934 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 CA8P35219 290 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 NTHL1P78549 312 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 DSG2Q14126 1118 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 SF3A2Q15428 464 aaKnown RBP13.04□□□□□ -0.32
NUP98-204ENST00000397004 ZNF322Q6U7Q0 402 aaPredicted RBP13.04□□□□□ -0.32
NUP98-204ENST00000397004 DGLUCYQ7Z3D6 616 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 ZNF784Q8NCA9 323 aaPredicted RBP13.04□□□□□ -0.32
NUP98-204ENST00000397004 SLC37A3Q8NCC5 494 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 TMEM255BQ8WV15 326 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 LINC00615Q96LM1 132 aaPredicted RBP13.04□□□□□ -0.32
NUP98-204ENST00000397004 DKK3Q9UBP4 350 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 ATG4BQ9Y4P1 393 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 NUMA1Q14980 2115 aa13.04□□□□□ -0.32
NUP98-204ENST00000397004 MDC1Q14676 2089 aaKnown RBP13.03□□□□□ -0.32
NUP98-204ENST00000397004 A0A1W2PR48 441 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 SHC1P29353 583 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 MNX1P50219 401 aaPredicted RBP13.03□□□□□ -0.32
NUP98-204ENST00000397004 UBE3AQ05086 875 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 TMEM107Q6UX40 140 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 CCDC116Q8IYX3 515 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 AP3S1Q92572 193 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 SECISBP2Q96T21 854 aaKnown RBP13.03□□□□□ -0.32
NUP98-204ENST00000397004 BCL2L10Q9HD36 194 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 WASH6PQ9NQA3 447 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 EXOGQ9Y2C4 368 aaKnown RBP13.03□□□□□ -0.32
NUP98-204ENST00000397004 LTBP2Q14767 1821 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 A0A0G2JK05 382 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 AHRP35869 848 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 NCBP2P52298 156 aaKnown RBP eCLIP13.03□□□□□ -0.32
NUP98-204ENST00000397004 TSPAN31Q12999 210 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 SLC36A2Q495M3 483 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 BCL2L15Q5TBC7 163 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 C18orf63Q68DL7 685 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 AMIGO1Q86WK6 493 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 GPR135Q8IZ08 494 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 ANGPTL6Q8NI99 470 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 TFGQ92734 400 aaPredicted RBP13.03□□□□□ -0.32
NUP98-204ENST00000397004 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.03□□□□□ -0.32
NUP98-204ENST00000397004 GHITMQ9H3K2 345 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 CDCP1Q9H5V8 836 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 ACSS1Q9NUB1 689 aaPredicted RBP13.03□□□□□ -0.32
NUP98-204ENST00000397004 IMP3Q9NV31 184 aaKnown RBP13.03□□□□□ -0.32
NUP98-204ENST00000397004 EXTL2Q9UBQ6 330 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 EXOSC1Q9Y3B2 195 aaKnown RBP13.03□□□□□ -0.32
NUP98-204ENST00000397004 PRRT4C9JH25 899 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 NDUFS4O43181 175 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 SMARCD3Q6STE5 483 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 CREB3L2Q70SY1 520 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 TMEM99Q8N816 258 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 DPEP2Q9H4A9 486 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 TAS2R7Q9NYW3 318 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 ZFR2Q9UPR6 939 aaKnown RBP13.03□□□□□ -0.32
NUP98-204ENST00000397004 GSTK1Q9Y2Q3 226 aa13.03□□□□□ -0.32
NUP98-204ENST00000397004 OR1F1O43749 312 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 CISD3P0C7P0 127 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 LINC00271P0C7V0 271 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 PRKAR1AP10644 381 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 IL9P15248 144 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 XPAP23025 273 aaPredicted RBP13.02□□□□□ -0.32
NUP98-204ENST00000397004 CSNK1G2P78368 415 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 CCDC85BQ15834 202 aaPredicted RBP13.02□□□□□ -0.32
NUP98-204ENST00000397004 RASSF6Q6ZTQ3 369 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 TBX5Q99593 518 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 MKRN2Q9H000 416 aaKnown RBP13.02□□□□□ -0.32
NUP98-204ENST00000397004 SLC35C2Q9NQQ7 365 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 IL20Q9NYY1 176 aa13.02□□□□□ -0.32
NUP98-204ENST00000397004 SCN3AQ9NY46 2000 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 A0A0B4J203 849 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 LATO43561 262 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 HK1P19367 917 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 GPR1P46091 355 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 RNF144AP50876 292 aaPredicted RBP13.02□□□□□ -0.33
NUP98-204ENST00000397004 SMIM11AP58511 58 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 REEP5Q00765 189 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 E2F1Q01094 437 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 MLC1Q15049 377 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 IDNKQ5T6J7 187 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 C17orf64Q86WR6 236 aa13.02□□□□□ -0.33
NUP98-204ENST00000397004 KRT78Q8N1N4 520 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms