RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SH3BP4Q9P0V3 963 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 SLAMF8Q9P0V8 285 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 TEKT2Q9UIF3 430 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 GOLGA4Q13439 2230 aaKnown RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 A0A087WZY1 265 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 AGAP5A6NIR3 686 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 CCT8L1PA6NM43 557 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 A8MVJ9 347 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 CLIC1O00299 241 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 EIF4E2O60573 245 aaKnown RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 OR6B1O95007 311 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 WDPCPO95876 746 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 EPPINO95925 133 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 C1QCP02747 245 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 CYP4B1P13584 511 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 CD247P20963 164 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 CASP3P42574 277 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ALDH9A1P49189 494 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 GABPB1Q06547 395 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 DCST2Q5T1A1 773 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF468Q5VIY5 522 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 SLC16A11Q8NCK7 471 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 OR6S1Q8NH40 331 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 KAT2AQ92830 837 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 VPS33AQ96AX1 596 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 DHRS1Q96LJ7 313 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 PANX1Q96RD7 426 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ARHGDIGQ99819 225 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 SLX1AQ9BQ83 275 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 OR51I1Q9H343 314 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 MMADHCQ9H3L0 296 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 EFCAB1Q9HAE3 211 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 Q9N2J8 555 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ARL8BQ9NVJ2 186 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 CCDC167Q9P0B6 97 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ALPPP05187 535 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 SOX3P41225 446 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 MNAT1P51948 309 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ATP12AP54707 1039 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 POU6F2P78424 691 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ID2Q02363 134 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 GK3PQ14409 553 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ITPR1Q14643 2758 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF169Q14929 603 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 PGS1Q32NB8 556 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 GRAMD1BQ3KR37 738 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 IQCCQ4KMZ1 466 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 TIGD2Q4W5G0 525 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 COX20Q5RI15 118 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 NXNQ6DKJ4 435 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ADGRE4PQ86SQ3 457 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 SLC15A3Q8IY34 581 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF619Q8N2I2 560 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 C9orf43Q8TAL5 461 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 NSL1Q96IY1 281 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 LAT2Q9GZY6 243 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 SLC25A18Q9H1K4 315 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 RUBCNLQ9H714 662 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ANAPC2Q9UJX6 822 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 C15orf41Q9Y2V0 281 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 KCNE3Q9Y6H6 103 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 TRAV17A0A0B4J275 112 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 LINC01387J3KSC0 135 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 HCN1O60741 890 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 UGT2B17O75795 530 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 OR2J2O76002 312 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 CHRM4P08173 479 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 TSPAN19P0C672 248 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ADH6P28332 368 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 B3GALT5-AS1P59052 145 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 RPS6KA2Q15349 733 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 BCL2A1Q16548 175 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 LINC00114Q6XXX2 140 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 SNX32Q86XE0 403 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 DTNBP1Q96EV8 351 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 C16orf58Q96GQ5 468 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ABHD17AQ96GS6 310 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 PPP1R36Q96LQ0 422 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 SIGLEC12Q96PQ1 595 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 FAM173AQ9BQD7 235 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 YIPF2Q9BWQ6 316 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 MTHFD2LQ9H903 347 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ZCCHC3Q9NUD5 404 aaKnown RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 ACAD8Q9UKU7 415 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 KLF13Q9Y2Y9 288 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-202ENST00000394943 DTNAQ9Y4J8 743 aa6.43□□□□□ -1.38
LIMA1-202ENST00000394943 SDK1Q7Z5N4 2213 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 NR5A2O00482 541 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 MRASO14807 208 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 HCRTR2O43614 444 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 LYPD3O95274 346 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 IFNA16P05015 189 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 GPC1P35052 558 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 NRG3P56975 720 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 DSTNP60981 165 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 MRPS35P82673 323 aaKnown RBP6.42□□□□□ -1.38
LIMA1-202ENST00000394943 KLRB1Q12918 225 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 TRAP1Q12931 704 aaKnown RBP6.42□□□□□ -1.38
LIMA1-202ENST00000394943 HSPB3Q12988 150 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms