RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SHOXO15266 292 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 EGFP01133 1207 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 HEXBP07686 556 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 TAS2R41P59536 307 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 NCF4Q15080 339 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 GPR19Q15760 415 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 MAJINQ3KP22 176 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 CYB5R2Q6BCY4 276 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 ENPP7Q6UWV6 458 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 C16orf62Q7Z3J2 963 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 OR4K5Q8NGD3 323 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 NECTIN4Q96NY8 510 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 OR2M4Q96R27 311 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 OR5M11Q96RB7 305 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 EQTNQ9NQ60 294 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 LYARQ9NX58 379 aaKnown RBP9.06□□□□□ -0.96
COL6A3-204ENST00000392003 CLEC1BQ9P126 229 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 MALT1Q9UDY8 824 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 ATG4BQ9Y4P1 393 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 CHD9Q3L8U1 2897 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 MUC22E2RYF6 1773 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-204ENST00000392003 PLXND1Q9Y4D7 1925 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 DSPPQ9NZW4 1301 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 IGKV1-8A0A0C4DH67 115 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 A0A1W2PR48 441 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 A0A1W2PRQ8 180 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 ISPDA4D126 451 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 PGRMC2O15173 223 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 CASC3O15234 703 aaKnown RBP9.06□□□□□ -0.96
COL6A3-204ENST00000392003 AIFM1O95831 613 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 ALPPP05187 535 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 ASGR2P07307 311 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 RNF224P0DH78 156 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 TGM1P22735 817 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 IGFALSP35858 605 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 MRPS15P82914 257 aaKnown RBP9.06□□□□□ -0.96
COL6A3-204ENST00000392003 RELQ04864 619 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-204ENST00000392003 SLC13A2Q13183 592 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 TMEM196Q5HYL7 178 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 SPANXN2Q5MJ10 180 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 TMEM107Q6UX40 140 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 TMEM184AQ6ZMB5 413 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 PLEKHG7Q6ZR37 379 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 IQCHQ86VS3 1027 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 GJD3Q8N144 294 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 MFSD9Q8NBP5 474 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 LRRC20Q8TCA0 184 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 NR4A3Q92570 626 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 MND1Q9BWT6 205 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 TSSK6Q9BXA6 273 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 PINK1Q9BXM7 581 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 TEX12Q9BXU0 123 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 SLC6A20Q9NP91 592 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 SLC6A14Q9UN76 642 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 ASB4Q9Y574 426 aa9.06□□□□□ -0.96
COL6A3-204ENST00000392003 AGAP5A6NIR3 686 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 WASHC1A8K0Z3 465 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 KIAA0513O60268 411 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 SLITRK5O94991 958 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 CERS1P27544 350 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 TSFMP43897 325 aaKnown RBP9.05□□□□□ -0.96
COL6A3-204ENST00000392003 BTN3A2P78410 334 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 ALDH6A1Q02252 535 aaKnown RBP9.05□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF45Q02386 682 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 GINS1Q14691 196 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF311Q5JNZ3 666 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 WASH2PQ6VEQ5 465 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 AMIGO1Q86WK6 493 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 LACC1Q8IV20 430 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 NUP43Q8NFH3 380 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 OR4E2Q8NGC2 313 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 TEX47Q8TBZ9 253 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 HMGB4Q8WW32 186 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 PRRC1Q96M27 445 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 PRRG3Q9BZD7 231 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 PRDM7Q9NQW5 492 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 CTPS2Q9NRF8 586 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 NDRG2Q9UN36 371 aaKnown RBP9.05□□□□□ -0.96
COL6A3-204ENST00000392003 A4GNTQ9UNA3 340 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 LIPT1Q9Y234 373 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 K7EQS6 105 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 TBX1O43435 398 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 TLX2O43763 284 aaPredicted RBP9.05□□□□□ -0.96
COL6A3-204ENST00000392003 ATXN8OSP0DMR3 200 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 MAGP20916 626 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 PSMA1P25786 263 aaKnown RBP9.05□□□□□ -0.96
COL6A3-204ENST00000392003 PTGER1P34995 402 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 SMSP52788 366 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 CLDN2P57739 230 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 ENPP2Q13822 863 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 SPHARQ15513 63 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 SNAPC1Q16533 368 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF181Q2M3W8 571 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 C12orf73Q69YU5 71 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 SLC48A1Q6P1K1 146 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 SLC22A16Q86VW1 577 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 NRROSQ86YC3 692 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 CAMKK1Q8N5S9 505 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 POC5Q8NA72 575 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 OR4D11Q8NGI4 311 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms