RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SLC2A12Q8TD20 617 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 ZFAND2BQ8WV99 257 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 OR10A5Q9H207 317 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 OR10A2Q9H208 303 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 WDR6Q9NNW5 1121 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 B3GNT3Q9Y2A9 372 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 F5H5P2 479 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 GMDSO60547 372 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 CSF1P09603 554 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 CDKN2DP55273 166 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 ACY1Q03154 408 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 PIGFQ07326 219 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 AARDQ4LEZ3 155 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 PAPD5Q8NDF8 572 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 LMF1Q96S06 567 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 CCNL2Q96S94 520 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 MYADMQ96S97 322 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 IRS2Q9Y4H2 1338 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 CD63P08962 238 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 FDXRP22570 491 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF423Q2M1K9 1284 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 METTL11BQ5VVY1 283 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 TSPYL5Q86VY4 417 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 ANKRD13BQ86YJ7 626 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 PRR18Q8N4B5 295 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 OR5B2Q96R09 309 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 SEMA4FO95754 770 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 SERPINA5P05154 406 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 CHATP28329 748 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF674Q2M3X9 581 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 EMC10Q5UCC4 262 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 GDPD1Q8N9F7 314 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 OR5L1Q8NGL2 311 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 FRS2Q8WU20 508 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 DPH2Q9BQC3 489 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 BCL7BQ9BQE9 202 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 DNAJB11Q9UBS4 358 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 EIF3FO00303 357 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 OSMP13725 252 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 PRSS3P35030 304 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 MAGEA6P43360 314 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 HTR3AP46098 478 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 RPL23AP62750 156 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 PRSS48Q7RTY5 328 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 KCTD20Q7Z5Y7 419 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 MAP3K3Q99759 626 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 PPIL3Q9H2H8 161 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 SLC1A7O00341 560 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 BDKRB2P30411 391 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 SPINT3P49223 89 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 HES5Q5TA89 166 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 OR6C4Q8NGE1 309 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 TCTEX1D2Q8WW35 142 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 TANKQ92844 425 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 TMEM19Q96HH6 336 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 ASF1BQ9NVP2 202 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 NAP1L6A6NFF2 107 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 OR5W2Q8NH69 310 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 TRUB1Q8WWH5 349 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 CACNG6Q9BXT2 260 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 PCDHA9Q9Y5H5 950 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 TYROBPO43914 113 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 SERPINE2P07093 398 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 THEGLP0DJG4 465 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 FOSL1P15407 271 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 TCEAL1Q15170 157 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 NDUFAF5Q5TEU4 345 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 IL17FQ96PD4 163 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 SLC17A9Q9BYT1 436 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 PAQR5Q9NXK6 330 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 NDUFAF4Q9P032 175 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 MCTS1Q9ULC4 181 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 SLC6A5Q9Y345 797 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 NUBP2Q9Y5Y2 271 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 PEAK1Q9H792 1746 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 KNG1P01042 644 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ALDOBP05062 364 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 CAV2P51636 162 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ENPP6Q6UWR7 440 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 OR9A2Q8NGT5 310 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 IGSF8Q969P0 613 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 PINK1Q9BXM7 581 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 HIPK2Q9H2X6 1198 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 IL23AQ9NPF7 189 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 GPR83Q9NYM4 423 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 GPR160Q9UJ42 338 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 CNOT11Q9UKZ1 510 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 F8W036 122 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 NDUFB2O95178 105 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 SOX3P41225 446 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 HTR2BP41595 481 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 IDH3GP51553 393 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 BLOC1S1P78537 153 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 NR0B2Q15466 257 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 MICAQ29983 383 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 SFRP4Q6FHJ7 346 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 TLDC1Q6P9B6 456 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ASRGL1Q7L266 308 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 DCP2Q8IU60 420 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 L3HYPDHQ96EM0 354 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms